| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,595,247 – 1,595,349 |
| Length | 102 |
| Max. P | 0.933629 |
| Location | 1,595,247 – 1,595,349 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 70.47 |
| Shannon entropy | 0.55802 |
| G+C content | 0.48908 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -14.82 |
| Energy contribution | -15.63 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1595247 102 + 21146708 CCCAUAGCAUUCAAGAGCUAGCCGUGCUUGAUCUAGACAAGUAUCCGGAUUCAGUAGUCAAACCGGGUCCGGGACUGUGUAUGAGGCACGCGAAUAGACAAC ....((((........))))((.((((((.(..((.(((.((.(((((((((.((......)).)))))))))))))).))).))))))))........... ( -31.40, z-score = -1.80, R) >dp4.chr3 4653664 89 - 19779522 -CCACACGAUCUAAUUGUCACUGCCACUCAAC--AGGUCCACCAAUAGGCUUUGUUCCCGGAA-GGAACCGGCACAGGGACAGGGAUAGGGAC--------- -((.....((((...((((..((((....(((--(((.((.......)).)))))).((....-))....))))....)))).))))..))..--------- ( -23.40, z-score = 0.12, R) >droSim1.chr2R 492701 101 + 19596830 -CCAUAGCAUUCAAGAGUUGGCCGUGCUUGAUCUAGACAAAUAUCCGGAUUCAGUACUCAAACUGGGUCCGGGACUAUGUAUGAGGCACGCGAAUAGACAAC -...............(((.((.((((((.((....(((....((((((((((((......))))))))))))....))))).)))))))).)))....... ( -31.50, z-score = -2.50, R) >droSec1.super_26 232747 101 + 826190 -CCAUAGCAUUCAAGAGUUGGCCGUGCUUGAUCUAGACAAAUAUCCGGAUUCAGUACUCAAACUGGGUUCGGGACUAUGUAUGAGGCACGCGAAUAGACAAC -...............(((.((.((((((.((....(((....((((((((((((......))))))))))))....))))).)))))))).)))....... ( -28.60, z-score = -1.81, R) >droYak2.chr2L 1366150 98 - 22324452 -ACAUAGCAUUCAAGAGCUAGCUGCGCUUGAUCUAAACAAAUCUCCGGAUCUAGUACUCAAACUGGGUCUGUGACUAUAAAUGAGGCACGCGAAUAAAC--- -.....((..(((((.((.....)).)))))(((.........((((((((((((......)))))))))).)).........)))...))........--- ( -24.07, z-score = -1.69, R) >droEre2.scaffold_4929 5874220 101 - 26641161 -CCAUAGCCUUCAAGAGUUAGCCGGGCUUGAUCUAGACAAAUCUCCGGAUCCAGUACUCAAACUGGGCUCGGGACUAGAAAUGAGGCACGCGAAUAGACAAC -.....(((((....((((..(((((((.((((..((......))..))))((((......)))))))))))))))......)))))............... ( -29.20, z-score = -1.48, R) >consensus _CCAUAGCAUUCAAGAGUUAGCCGUGCUUGAUCUAGACAAAUAUCCGGAUUCAGUACUCAAACUGGGUCCGGGACUAUGAAUGAGGCACGCGAAUAGACAAC ......((.((((.((((.......))))..............((((((((((((......))))))))))))........))))))............... (-14.82 = -15.63 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:12 2011