| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,594,413 – 1,594,522 |
| Length | 109 |
| Max. P | 0.776771 |
| Location | 1,594,413 – 1,594,522 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.10 |
| Shannon entropy | 0.34721 |
| G+C content | 0.41040 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -14.95 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1594413 109 + 21146708 CAUUUCAUUUGUGUGCCGCUUGUGCGCCGUAAGAUUGGCCUCAAACUUUUCCUCACC----UAUGUUCAUACCGAAAGGAAGUGACACGCUCCCGUAUUAAAAACAAAGUUUA ..........(((((.((((((.(.((((......))))).)...............----..........((....))))))).)))))....................... ( -21.70, z-score = -0.55, R) >droSim1.chr2R 491962 90 + 19596830 AAUUUCAUUUUUGUGCCGCUUGUGCGCCGCAAAAUUGGCCUCAAACAUAUCCUCAGCUGCAUAUGUGUAUACCGAAAGAAAGUGACACUA----------------------- ....(((((((((((.(((....))).)))....((((......((((((.(......).)))))).....))))..)))))))).....----------------------- ( -20.30, z-score = -0.98, R) >droSec1.super_26 232008 90 + 826190 AAUUUCAUUUUUGUGCCGCUUGUGCGCCGCAAAAUUGACCUCAAACAUUUCCUCACUUACAUAUGUGUAUAUCGAAAGAAAGUGACACUA----------------------- ....(((.(((((((.(((....))).))))))).)))..............(((((((((....)))...((....)))))))).....----------------------- ( -22.00, z-score = -3.32, R) >consensus AAUUUCAUUUUUGUGCCGCUUGUGCGCCGCAAAAUUGGCCUCAAACAUUUCCUCACCU_CAUAUGUGUAUACCGAAAGAAAGUGACACUA_______________________ ....(((.(((((((.(((....))).))))))).)))..........................((((.(.((....)).)...))))......................... (-14.95 = -15.40 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:11 2011