| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,574,018 – 1,574,125 |
| Length | 107 |
| Max. P | 0.829626 |
| Location | 1,574,018 – 1,574,125 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.62 |
| Shannon entropy | 0.36050 |
| G+C content | 0.47549 |
| Mean single sequence MFE | -32.44 |
| Consensus MFE | -19.82 |
| Energy contribution | -18.94 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1574018 107 + 21146708 CCCAUGCGUGGCAGCUAUUUUUUUAAAGUGCCAGCGCAUACUA-AAGCCCGUACGGUUGAACUGUUUCGGGCAAGUGC----------UUCAAUCGCAACAGUAGAUUGGCGUAUCCG ...((((((((((.((..........))))))).)))))....-..(((((.((((.....))))..)))))..((((----------.((((((((....)).)))))).))))... ( -35.30, z-score = -2.02, R) >droEre2.scaffold_4929 5837734 102 - 26641161 CCCAUGCAUGGCAUUU---UAUUUAAAGUGCCAGC--AUAUUU-GAGCCCAUGCGGUUGAACUGUUUGGGGCAAGUGC----------UUCAACCGAAACAGUAGGUUGGCACAUCCG ...((((.((((((((---(....)))))))))))--))....-..((((..((((.....))))...))))..((((----------..(((((.........)))))))))..... ( -39.10, z-score = -3.33, R) >droYak2.chr2L 1342123 115 - 22324452 CCCAUGCGUGAAUUUU---UGUUUAAAGUGCCAGCAUAUACUACAAGCCCGUACGGUUAAACUGUUGGGGGCAAGUGCACUUAAGUGUUUCAAUCGAAACAGUAGAUUGGCAUAUCCG ........(((((...---.)))))..(((((((......((((..((((.(((((.....))).)).)))).............((((((....)))))))))).)))))))..... ( -28.20, z-score = -0.22, R) >droSec1.super_26 210887 86 + 826190 -------------------UAUUUAAAGUGCCAGC--AUAUUA-AAGCCCGUACGGUCGAACUGUUUCGGGCAAGUGC----------UUCAAUCGCAACAGUGGAUUGGCGUAUCCG -------------------..(((((.(((....)--)).)))-))(((((.((((.....))))..)))))..((((----------.((((((.((....)))))))).))))... ( -25.50, z-score = -1.79, R) >droSim1.chr2R 471492 102 + 19596830 CCCAUGCGUGGCAUAU---UAUUUAAAGUGCCAGC--AUAUUA-AAGCCCGUACGGUCGAACUGUUUCGGGCAAGUGC----------UUCAAUCGCAACAGUGGAUUGGCGUAUCCG ...((((.((((((.(---(....)).))))))))--))....-..(((((.((((.....))))..)))))..((((----------.((((((.((....)))))))).))))... ( -34.10, z-score = -2.37, R) >consensus CCCAUGCGUGGCAUUU___UAUUUAAAGUGCCAGC__AUAUUA_AAGCCCGUACGGUUGAACUGUUUCGGGCAAGUGC__________UUCAAUCGCAACAGUAGAUUGGCGUAUCCG ...........................(((((..............((((..((((.....))))...))))...................((((.........)))))))))..... (-19.82 = -18.94 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:10 2011