| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,568,478 – 1,568,568 |
| Length | 90 |
| Max. P | 0.943654 |
| Location | 1,568,478 – 1,568,568 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 74.30 |
| Shannon entropy | 0.32651 |
| G+C content | 0.44138 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -10.97 |
| Energy contribution | -11.97 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1568478 90 + 21146708 GUUCAGUUGCGGUAACCCAAAGACGAGUUAACAUUUGCAUUCCCUUACCGAACAUCGAACUAUGCAAUCAUCGCAACUAUCAUAAGAUAC ....((((((((((((.(......).))).....((((((........((.....))....))))))..)))))))))............ ( -15.80, z-score = -1.58, R) >droSec1.super_26 205416 69 + 826190 GUCCAGUUGCGGUAACCCAAAGACGAGUUAGCAUUUGGAU---------------------AUGCAAUCACAGCAACUGUACAGAGAUAC ((.(((((((((....))............((((......---------------------)))).......))))))).))........ ( -17.50, z-score = -2.30, R) >droSim1.chr2R_random 78753 69 + 2996586 GUCCAGUUGCGGUAACCCAAAGACGAGUUAGCAUUUGGAU---------------------AUGCAACCACAGCAACUGUACAGAGAUAC ((.(((((((((....))......(.(((.((((......---------------------))))))))...))))))).))........ ( -18.50, z-score = -2.75, R) >consensus GUCCAGUUGCGGUAACCCAAAGACGAGUUAGCAUUUGGAU_____________________AUGCAAUCACAGCAACUGUACAGAGAUAC ((.(((((((((....)).....(((((....)))))...................................))))))).))........ (-10.97 = -11.97 + 1.00)
| Location | 1,568,478 – 1,568,568 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 74.30 |
| Shannon entropy | 0.32651 |
| G+C content | 0.44138 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -16.00 |
| Energy contribution | -15.56 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1568478 90 - 21146708 GUAUCUUAUGAUAGUUGCGAUGAUUGCAUAGUUCGAUGUUCGGUAAGGGAAUGCAAAUGUUAACUCGUCUUUGGGUUACCGCAACUGAAC ...........((((((((....((((((...(((.....))).......))))))....(((((((....))))))).))))))))... ( -22.00, z-score = -1.02, R) >droSec1.super_26 205416 69 - 826190 GUAUCUCUGUACAGUUGCUGUGAUUGCAU---------------------AUCCAAAUGCUAACUCGUCUUUGGGUUACCGCAACUGGAC ...........(((((((.......((((---------------------......))))(((((((....)))))))..)))))))... ( -19.40, z-score = -2.48, R) >droSim1.chr2R_random 78753 69 - 2996586 GUAUCUCUGUACAGUUGCUGUGGUUGCAU---------------------AUCCAAAUGCUAACUCGUCUUUGGGUUACCGCAACUGGAC ...........(((((((...(((.....---------------------(((((((.((......)).))))))).))))))))))... ( -19.80, z-score = -2.21, R) >consensus GUAUCUCUGUACAGUUGCUGUGAUUGCAU_____________________AUCCAAAUGCUAACUCGUCUUUGGGUUACCGCAACUGGAC ...........(((((((.......((((...........................))))(((((((....)))))))..)))))))... (-16.00 = -15.56 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:09 2011