| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,551,851 – 1,551,941 |
| Length | 90 |
| Max. P | 0.813246 |
| Location | 1,551,851 – 1,551,941 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 55.12 |
| Shannon entropy | 0.66589 |
| G+C content | 0.45832 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -8.50 |
| Energy contribution | -10.06 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1551851 90 - 21146708 AGAGCUUAGAUGCUCCCGCAGCUAAUUUGCAU-AGAUAACGAUAAUGA--UAUUGCUGCU-CAGCUAAGGCGCAGUUAAGUUGAACUGUGUCUC---------- .((((......))))..(((((.(((...(((-...........))).--.)))))))).-......((((((((((......)))))))))).---------- ( -26.60, z-score = -1.35, R) >droSim1.chr2R 444673 74 - 19596830 -----------GCCCGCACAGCUGAUUUGCAG-AGAUAACG---AUGA--UAUUGCUGCG-CAGCUGAUGCGCGGUAAAGUUUAACUGUCUC------------ -----------(((((((((((((....((((-..(((...---....--)))..)))).-)))))).)))).)))................------------ ( -26.10, z-score = -2.40, R) >droSec1.super_26 190220 74 - 826190 -----------GCCCGCACAGCUGAUUUGCAG-AGAUAACC---AUGA--UAUUGCUGCA-CAGCUGAUGCGCGGUAAAGUUUAACUGUCUC------------ -----------(((((((((((((...(((((-..(((...---....--)))..)))))-)))))).)))).)))................------------ ( -26.70, z-score = -3.23, R) >droVir3.scaffold_12954 1456642 104 + 2014198 AAAGUUUAAAAGCUCGCGGGAGUGGCUUGUGUAAGCUAGACGCUUUGAGUCAUGUUUACGUUAGCAAUUGCGUUCUAGAGACUGGGUCUUUUUAGUUUACGUUA .........((((.(((....)))))))..((((((((((....((.((((......((((.(....).))))......)))).))....)))))))))).... ( -27.20, z-score = -0.37, R) >consensus ___________GCCCGCACAGCUGAUUUGCAG_AGAUAACC___AUGA__UAUUGCUGCG_CAGCUAAUGCGCGGUAAAGUUUAACUGUCUC____________ ...........(((((((((((((...((((.........................)))).)))))).)))).)))............................ ( -8.50 = -10.06 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:08 2011