| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,467,118 – 1,467,193 |
| Length | 75 |
| Max. P | 0.783092 |
| Location | 1,467,118 – 1,467,193 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 49.11 |
| Shannon entropy | 0.85014 |
| G+C content | 0.56792 |
| Mean single sequence MFE | -23.75 |
| Consensus MFE | -6.54 |
| Energy contribution | -5.98 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1467118 75 + 21146708 UGGGCACCAACAGUUGUGACGAUUAAUCGG-GGUUUGGGCGGCUCAGGGG-UUGCCCAGUGAAGUCGCUGUUAUUUC ........((((((...(((((....))..-...((((((((((....))-))))))))....)))))))))..... ( -23.20, z-score = -0.65, R) >droEre2.scaffold_4929 24317969 72 + 26641161 ----CGGACGCCACAGUGACGGUAAGUCGG-GGUUGGGCCAGCUCAGGGGGUGGCCCAGGGUCGUCGCAGAUAUUAA ----..((((((((..((((.....)))).-.))(((((((.((....)).))))))).)).))))........... ( -30.30, z-score = -2.55, R) >droYak2.chrU 10824522 63 + 28119190 -------------UUGGGACGGUUAGUCGAUGGUUUGGUCGGCUCUUGGG-UGGCCCAGGGUCGUCGCAGGUAUUUA -------------(((.(((((..(((((((......)))))))((((((-...)))))).))))).)))....... ( -23.00, z-score = -2.46, R) >droVir3.scaffold_12958 3165869 68 + 3547706 ---CAGACGGCUGGAAUCUUGGCAAUUGGCGGCUUCGAGUUGCGAAAGUGGUGCUCAAACAAUUCUGCUGU------ ---...(((((.(((((.((((((.((.(((((.....))))).)).....))).)))...))))))))))------ ( -18.50, z-score = -0.17, R) >consensus ____CG_C_GC_GUAGUGACGGUAAGUCGG_GGUUUGGGCGGCUCAGGGG_UGGCCCAGGGACGUCGCAGUUAUUUA ....................................(((((.((....)).)))))..................... ( -6.54 = -5.98 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:03 2011