| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,455,721 – 1,455,812 |
| Length | 91 |
| Max. P | 0.851725 |
| Location | 1,455,721 – 1,455,812 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 48.28 |
| Shannon entropy | 0.74825 |
| G+C content | 0.47439 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1455721 91 - 21146708 CAUAAGGAAGUGACGUUAUGUGCCUUCUUAGACAUACAGGGUGCUUUCGACAAUACCUCCCAUGAGGCUGUCAACGCAUCCCUGGCAAGAA------------------------- ....((((((..((.....))..)))))).......((((((((.((.((((...((((....)))).)))))).))).))))).......------------------------- ( -26.40, z-score = -1.45, R) >droYak2.chr3R 141792 116 - 28832112 AACCAAAAAUAUGCUUUCGGAGUGUUUGUGGAUAUAUCCGGAGCAUUCAACAACGUGACCACAGACGCUAUUAUGGACCGCCUAGAAGCGGCCAACACGCCCCCCGUUAUCAGUUU ...........((.(..((((((((((((((.....((((.............)).)))))))))))))....(((.((((......))))))).........)))..).)).... ( -29.92, z-score = -1.30, R) >dp4.Unknown_group_70 1058 116 - 32930 AACAAAAAGUAUGCUUUGGGAGCAUUUGUGGACAUCUCAGGAGCAUUCAACAACGUGGCCACAACCGCAAUAACAAGUCGCCCAGAAGCGAAUAACAUACACCCUGCAAUCAACGU ...........(((...(((.((..((((((.(((.....(......)......))).))))))..)).........((((......))))..........))).)))........ ( -23.60, z-score = 0.01, R) >consensus AACAAAAAAUAUGCUUUAGGAGCAUUUGUGGACAUAUCAGGAGCAUUCAACAACGUGACCACAGACGCUAUAAAAGAACGCCUAGAAGCGA__AACA__C_CCC_G__AUCA___U .....................((((((((((.(((.....(......)......))).)))))))))).........((((......))))......................... (-11.64 = -12.10 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:02 2011