| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,429,817 – 1,429,886 |
| Length | 69 |
| Max. P | 0.500000 |
| Location | 1,429,817 – 1,429,886 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Shannon entropy | 0.22625 |
| G+C content | 0.40500 |
| Mean single sequence MFE | -12.80 |
| Consensus MFE | -10.79 |
| Energy contribution | -10.90 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 1429817 69 - 21146708 UAUGCGGUUUAACCUAUCUGAAUGUCAUCAAACAUUGUCAGUGACAUUUAACGUAAAUUGGGUAACCAG .....((((..(((((..((((((((((............))))))))))........))))))))).. ( -15.00, z-score = -1.57, R) >droSim1.chr2R 350391 62 - 19596830 UAUGCGGCUCAACCUACCUAAAUGUCAUCAAACAUUGUCGGUGACAUUUAACGUCAAUCGGU------- .....((.....))....(((((((((((..........))))))))))).((.....))..------- ( -11.70, z-score = -1.04, R) >droSec1.super_26 72177 60 - 826190 --UGCGGCUCAACCUACCUAAAUGUCAUCAAACAUUGUCGGUGACAUUUAACGUCAAUCGGU------- --...((.....))....(((((((((((..........))))))))))).((.....))..------- ( -11.70, z-score = -1.06, R) >consensus UAUGCGGCUCAACCUACCUAAAUGUCAUCAAACAUUGUCGGUGACAUUUAACGUCAAUCGGU_______ .....((.....))....(((((((((((..........)))))))))))................... (-10.79 = -10.90 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:01 2011