| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,359,579 – 1,359,634 |
| Length | 55 |
| Max. P | 0.609078 |
| Location | 1,359,579 – 1,359,634 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 91.52 |
| Shannon entropy | 0.11687 |
| G+C content | 0.43906 |
| Mean single sequence MFE | -9.80 |
| Consensus MFE | -9.80 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.72 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1359579 55 - 21146708 UUUCUGAAAGUUUCGGUUCCGUUGCCUUUUUCGGAAUAAUUGUCGUGAUACUCCC .(((((((((....(((......))).)))))))))................... ( -9.80, z-score = -0.82, R) >droSim1.chr2R 19351791 54 + 19596830 UUUCUGAAAGUUUCGGUUCCGUUGCCUUUUUCGGAAUGAUAGUCGUAAACCCCC- .(((((((((....(((......))).)))))))))..................- ( -9.80, z-score = -0.67, R) >droSec1.super_105 4390 55 + 96962 UUUCUGAAAGUUUCGGUUCCGUUGCCUUUUUCGGAAUGAUAGUCGUAAACCCCCC .(((((((((....(((......))).)))))))))................... ( -9.80, z-score = -0.67, R) >consensus UUUCUGAAAGUUUCGGUUCCGUUGCCUUUUUCGGAAUGAUAGUCGUAAACCCCCC .(((((((((....(((......))).)))))))))................... ( -9.80 = -9.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:00 2011