| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,305,818 – 1,305,889 |
| Length | 71 |
| Max. P | 0.628883 |
| Location | 1,305,818 – 1,305,889 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 58.30 |
| Shannon entropy | 0.75657 |
| G+C content | 0.43742 |
| Mean single sequence MFE | -11.66 |
| Consensus MFE | -6.68 |
| Energy contribution | -5.68 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 2.00 |
| Mean z-score | 0.01 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1305818 71 + 21146708 UUGUGUUAACUCCUCCCCUUCUAAGACGAAGGCUGUCCACAGACUUUUUACAAUUGGCAAAUC-UAUUUGAA ...((((((.......(((((......)))))(((....)))...........))))))....-........ ( -10.40, z-score = -0.04, R) >droAna3.scaffold_13250 821660 71 - 3535662 UUAUGUUAACUACUCCCUCUUUAAGUCUAUUGUCGUCCUCGGGGAUACCCAACUCGCUGGUUGACCUUGAU- ....((((((((............(.(....).)......(((....))).......))))))))......- ( -11.40, z-score = 0.43, R) >droEre2.scaffold_4929 1237159 67 - 26641161 ----GUUAACUCCUCCCCUACUAGGAUGAAGGCUGUCCUCAGUCUUUUCAAAUUAUACGGUUGAUGAUGAA- ----((((((((((........)))).((((((((....))))))))............))))))......- ( -14.20, z-score = -0.91, R) >droWil1.scaffold_181149 186770 71 - 589524 AUGUGUUAACUCCUCCCUCGCUAGUUCGAAGGCCGUCCCCGGUUUUCCUCAGGGUGUCAAUGACACUACGU- ..((((((....(.((((....((...((((((((....)))))))))).)))).)....)))))).....- ( -18.20, z-score = -1.09, R) >droMoj3.scaffold_6500 3444479 72 - 32352404 UUGUGUUAACUCCUCCCCCACUUAGAUGAAUGACGUCCUCGGCUUUCUUGAAACUGUUAAUUAAUGUUUGAA ....((((((..............((((.....)))).((((.....))))....))))))........... ( -4.10, z-score = 1.65, R) >consensus UUGUGUUAACUCCUCCCCCACUAAGACGAAGGCCGUCCUCGGUCUUCUUAAAAUUGUCAAUUAAUCUUGGA_ ...........................((((((((....))))))))......................... ( -6.68 = -5.68 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:56 2011