| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,155,572 – 2,155,625 |
| Length | 53 |
| Max. P | 0.998088 |
| Location | 2,155,572 – 2,155,625 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 92.31 |
| Shannon entropy | 0.10396 |
| G+C content | 0.36654 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.14 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.25 |
| SVM RNA-class probability | 0.998088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2155572 53 + 23011544 AAUAAAAUUCGCGAAAUAUUAUUUUCGCUGAAGUAGGAUCCUACCUGACUUCU ..........((((((......)))))).((((((((......))).))))). ( -14.60, z-score = -4.25, R) >droSim1.chr2L 2109332 50 + 22036055 AAUAAAGUUCGCGAAAUAUUACUUUCGCUGAACUAGGAUCCUACCUGACU--- .....(((((((((((......)))))).)))))(((......)))....--- ( -13.10, z-score = -4.08, R) >droSec1.super_121 23853 50 + 59987 AAUAAAGUUCGCGAAAUAUUACUUUCGCUGAACUAGGAUCCUACCUGACU--- .....(((((((((((......)))))).)))))(((......)))....--- ( -13.10, z-score = -4.08, R) >consensus AAUAAAGUUCGCGAAAUAUUACUUUCGCUGAACUAGGAUCCUACCUGACU___ .....(((((((((((......)))))).)))))(((......)))....... (-11.60 = -11.93 + 0.33)
| Location | 2,155,572 – 2,155,625 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 92.31 |
| Shannon entropy | 0.10396 |
| G+C content | 0.36654 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -11.67 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.45 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.992638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2155572 53 - 23011544 AGAAGUCAGGUAGGAUCCUACUUCAGCGAAAAUAAUAUUUCGCGAAUUUUAUU .(((((.(((......)))))))).((((((......)))))).......... ( -15.30, z-score = -3.93, R) >droSim1.chr2L 2109332 50 - 22036055 ---AGUCAGGUAGGAUCCUAGUUCAGCGAAAGUAAUAUUUCGCGAACUUUAUU ---....(((......)))(((((.((((((......)))))))))))..... ( -13.70, z-score = -3.21, R) >droSec1.super_121 23853 50 - 59987 ---AGUCAGGUAGGAUCCUAGUUCAGCGAAAGUAAUAUUUCGCGAACUUUAUU ---....(((......)))(((((.((((((......)))))))))))..... ( -13.70, z-score = -3.21, R) >consensus ___AGUCAGGUAGGAUCCUAGUUCAGCGAAAGUAAUAUUUCGCGAACUUUAUU .......(((......)))(((((.((((((......)))))))))))..... (-11.67 = -12.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:22 2011