| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,263,445 – 1,263,508 |
| Length | 63 |
| Max. P | 0.814051 |
| Location | 1,263,445 – 1,263,508 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 55.47 |
| Shannon entropy | 0.73322 |
| G+C content | 0.44078 |
| Mean single sequence MFE | -12.20 |
| Consensus MFE | -5.53 |
| Energy contribution | -6.40 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1263445 63 - 21146708 --AAAACUACUUUCCACAACGAUGAAAGAGAUCGAUCAUUACAAUGAUUUCAAAGCCUGGUAAGG --.......(((.(((...((((.......))))(((((....))))).........))).))). ( -8.30, z-score = -0.39, R) >dp4.Unknown_group_194 9451 65 + 24178 AGAUGGAUGCUUUCCUGGAAGAUGGAAAAAGCAAAAGCAGGUGCUGAUACCAAAGCGUGGGAAAG .........(((((((......(((....((((........))))....)))......))))))) ( -13.60, z-score = -0.57, R) >anoGam1.chr3R 9428848 63 + 53272125 --UAAGCUACUUCCCGUCAUGUUGGAAGUGUGCCAAGGUCAUUCCCGUUCUCAAACCUGGGAAGG --.......(((((((...((.(((.((((.((....)))))).)))....))....))))))). ( -15.80, z-score = -0.65, R) >triCas2.chrUn_47 154866 63 + 241962 --UAAGACACUUGCCACAAAGUUGGAAACAUGCUCACAUCAUACUCAUACCAAAACCAGGCAAGG --.......((((((.......((....))((....))....................)))))). ( -11.10, z-score = -1.80, R) >consensus __AAAGAUACUUUCCACAAAGAUGGAAAAAUGCAAACAUCAUACUCAUACCAAAACCUGGGAAGG .........((((((......((((((....................)))))).....)))))). ( -5.53 = -6.40 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:55 2011