| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,254,369 – 1,254,516 |
| Length | 147 |
| Max. P | 0.916412 |
| Location | 1,254,369 – 1,254,516 |
|---|---|
| Length | 147 |
| Sequences | 4 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 64.93 |
| Shannon entropy | 0.53701 |
| G+C content | 0.52375 |
| Mean single sequence MFE | -45.50 |
| Consensus MFE | -17.11 |
| Energy contribution | -18.93 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1254369 147 - 21146708 ACAAAAAAAUUGUCGAGGCGACGGCGUCUCGCCAUUUUCGGCCGUGGGAAAUCCGUCAUUUCAGACGGUGGCUUGCAGGCUAAACUGCAAUGGCAUCAGAAG-UGGUGACGGAGUAUCCCAAAGGCGGCAUAUGGUGAGAGGAAGGAC .........((((((...))))))(.(((((((((...(.(((.(((((..(((((((((......((((.(((((((......)))))).).)))).....-.)))))))))...)))))..))).)...))))))))).)...... ( -62.20, z-score = -4.68, R) >droYak2.chrU 19656484 124 - 28119190 AUGAAGAAAUUGUCGAGGCGACGGCGUGUCGUUAUUUAUGGCCGUGGG-UCUCCGUAAUCCGUCAUGGUGG------------------UUUGCAGGCCAAACUGCAAUUGAACCAGAU--AUGUUGACGUAUGUUGA-AUGUAGG-- ......((((...(((.(((....))).)))..)))).((((((..(.-.(.((((........)))).).------------------.)..).)))))..(((((.((.(((...((--(((....)))))))).)-)))))).-- ( -35.10, z-score = -0.20, R) >droSec1.super_661 8824 125 - 9416 ACAAAAAAAUUGUCGAGGCGACGGCGUCUCGACAUUUCUGGCCGUGGGAAAUCCGUAGUUUCAGAUGG----------------------UAGUAUCACUAA-UGGUGUCGGAGUAGCCCAACGGCGGCAUAGGGUGAUAGGCAGAAC ..........((((((((((....)))))))))).((((((((((..(((((.....)))))..))))----------------------)..(((((((..-..((((((..((......))..))))))..)))))))..))))). ( -46.30, z-score = -3.42, R) >droSim1.chrU 2647045 111 - 15797150 --------------GAGGCGACGGCGUCUCGACAUUUCUGGCCGUGGGAAAUCCGUAGUUUCGGAUGG----------------------UGGUAUCACUAA-UGGUGUCGGAGUAGCCCAACGGCGGCAUAGGGUGAUAGGCAGGAC --------------((((((....))))))......(((.(((.......(((((......)))))..----------------------...(((((((..-..((((((..((......))..))))))..)))))))))).))). ( -38.40, z-score = -0.86, R) >consensus ACAAAAAAAUUGUCGAGGCGACGGCGUCUCGACAUUUCUGGCCGUGGGAAAUCCGUAAUUUCAGAUGG______________________UGGCAUCACAAA_UGGUGUCGGAGUAGCCCAACGGCGGCAUAGGGUGAUAGGCAGGAC ..........((((((((((....))))))..........((((((((....((((........)))).........................(((((.....))))).........))).))))))))).................. (-17.11 = -18.93 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:54 2011