| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,232,416 – 1,232,481 |
| Length | 65 |
| Max. P | 0.982938 |
| Location | 1,232,416 – 1,232,481 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 50.75 |
| Shannon entropy | 0.80556 |
| G+C content | 0.40421 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -8.10 |
| Energy contribution | -8.85 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.982938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1232416 65 - 21146708 ----UAGAUAACGAAGAUAUUGUUGCACAACUGAGGCGCCGUAAAGAUUAACUGUGUCUUCAAAGUUGG ----..(.((((((.....))))))).((((((((((((.((........)).)))))))...))))). ( -15.00, z-score = -1.56, R) >droSim1.chrU 5252394 69 - 15797150 UAGAUAGCUAAUAGCGAAAGCUAACGACAGCUGAGUUACCGUAGAGGGUAAUGGUGUCUCCAAAGUUGG ....(((((..((((....))))..((((.(...((((((......))))))).)))).....))))). ( -20.50, z-score = -2.46, R) >droSec1.super_59 143146 65 - 165940 ----UGGAUAACGAAGAUAAUGCUGCACAGCUGAGGUGCCAUAAAGUUUAACUGUGCCUCCAAAGUUGG ----((((......((......))((((((.((((.(.......).)))).)))))).))))....... ( -12.60, z-score = 0.21, R) >droEre2.scaffold_4929 24234089 56 - 26641161 ----------AAACAACCAAUAUGCCACCUUUGGGGU--UAUGAUUAAUAAGAACACACAAAUAGAUU- ----------.......((..((.(((....))).))--..)).........................- ( -3.00, z-score = 1.39, R) >consensus ____UAGAUAACAAAGAUAAUGUUCCACAGCUGAGGUGCCAUAAAGAUUAACUGUGCCUCCAAAGUUGG ...........................(((((((((((((((........))))))))))...))))). ( -8.10 = -8.85 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:52 2011