| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,132,134 – 1,132,199 |
| Length | 65 |
| Max. P | 0.917533 |
| Location | 1,132,134 – 1,132,199 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 66.50 |
| Shannon entropy | 0.54335 |
| G+C content | 0.44397 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -8.75 |
| Energy contribution | -8.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1132134 65 + 21146708 GUGUAACCAACACAGGGUUCGGGUU--GUACCCGAAUGUUCACGAUUGUAAAAAUUUGAGCAAUCGG ((((.....))))((.(((((((..--...))))))).))..(((((((..........))))))). ( -21.20, z-score = -2.76, R) >droSim1.chr2R 94064 63 + 19596830 GUGUAGGCAACA--GUGUUCGGGUU--GUACCCGAAUGUGCACGAUUUUAAAAGUACGAGCUUUUCG ((((((....).--..(((((((..--...))))))).)))))......((((((....)))))).. ( -19.00, z-score = -2.18, R) >droSec1.super_59 58110 63 + 165940 GUGUAGGCAACA--GUGUUUGGGUU--GUACCCGAAUGUGCACGAUUUUACAAGUAUGAGCAAUCGG ((((((....).--..(((((((..--...))))))).))))).............(((....))). ( -16.30, z-score = -0.94, R) >droAna3.scaffold_13099 2545610 66 - 3324263 AUUUUGACGACGCAAAAUGCCGGUGAAGAACCCGAAUGC-CACACCAAAAUACCUUUUAUCAAUUUG ((((((.....(((.....(.(((.....))).)..)))-.....))))))................ ( -6.70, z-score = 0.04, R) >consensus GUGUAGGCAACA__GUGUUCGGGUU__GUACCCGAAUGUGCACGAUUUUAAAAGUAUGAGCAAUCGG ................((((((((.....)))))))).............................. ( -8.75 = -8.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:48 2011