| Sequence ID | dm3.chr2R |
|---|---|
| Location | 997,195 – 997,254 |
| Length | 59 |
| Max. P | 0.736906 |
| Location | 997,195 – 997,254 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 57.47 |
| Shannon entropy | 0.58324 |
| G+C content | 0.39177 |
| Mean single sequence MFE | -14.07 |
| Consensus MFE | -5.35 |
| Energy contribution | -5.35 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 997195 59 + 21146708 ---------------UCUGGUAGAUGUAUUUUUCCAUUUACGUUUUUUGACUUAAAAAGGCAUUUUUACACUUU ---------------....(((((((........)))))))(((((((......)))))))............. ( -10.00, z-score = -2.14, R) >droSim1.chr3L 30412 73 - 22553184 UCUGGUAGCUUACCGCACGAUAGG-GUUUCCCCAUACUCCCGUGCACCAACUUCUGAAGUUGAUUUCAUAUUUU ...((((...))))(((((...((-((........)))).)))))..(((((.....)))))............ ( -16.10, z-score = -1.49, R) >droSec1.super_51 148808 73 - 201256 UCUGGUAGCUUACCGCACGAUAGG-GUUUCCCCAUACUCCCGUGCACCAACUUCUGAAGUUGAUUUCAUAUUUU ...((((...))))(((((...((-((........)))).)))))..(((((.....)))))............ ( -16.10, z-score = -1.49, R) >consensus UCUGGUAGCUUACCGCACGAUAGG_GUUUCCCCAUACUCCCGUGCACCAACUUCUGAAGUUGAUUUCAUAUUUU ..............(((((..((.............))..)))))..(((((.....)))))............ ( -5.35 = -5.35 + 0.01)
| Location | 997,195 – 997,254 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 57.47 |
| Shannon entropy | 0.58324 |
| G+C content | 0.39177 |
| Mean single sequence MFE | -17.83 |
| Consensus MFE | -5.59 |
| Energy contribution | -6.60 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 997195 59 - 21146708 AAAGUGUAAAAAUGCCUUUUUAAGUCAAAAAACGUAAAUGGAAAAAUACAUCUACCAGA--------------- ...(((((......((..((((.((......)).)))).)).....)))))........--------------- ( -4.50, z-score = 0.02, R) >droSim1.chr3L 30412 73 + 22553184 AAAAUAUGAAAUCAACUUCAGAAGUUGGUGCACGGGAGUAUGGGGAAAC-CCUAUCGUGCGGUAAGCUACCAGA ..........(((((((.....)))))))((((((......(((....)-))..))))))((((...))))... ( -24.50, z-score = -3.20, R) >droSec1.super_51 148808 73 + 201256 AAAAUAUGAAAUCAACUUCAGAAGUUGGUGCACGGGAGUAUGGGGAAAC-CCUAUCGUGCGGUAAGCUACCAGA ..........(((((((.....)))))))((((((......(((....)-))..))))))((((...))))... ( -24.50, z-score = -3.20, R) >consensus AAAAUAUGAAAUCAACUUCAGAAGUUGGUGCACGGGAGUAUGGGGAAAC_CCUAUCGUGCGGUAAGCUACCAGA ..........(((((((.....)))))))(((((.....(((((......)))))))))).............. ( -5.59 = -6.60 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:46 2011