| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,151,582 – 2,151,677 |
| Length | 95 |
| Max. P | 0.967283 |
| Location | 2,151,582 – 2,151,677 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 62.48 |
| Shannon entropy | 0.56115 |
| G+C content | 0.27615 |
| Mean single sequence MFE | -11.21 |
| Consensus MFE | -6.30 |
| Energy contribution | -5.68 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2151582 95 + 23011544 AUCGUUUUCAAAACAAAGAGCUUGUAAGUUCGAUUUUAAAAUUUCACUUGCUCAAAAUAAAUUAAAUAUUGUUCAACAUUUCAAAAACCAACGAA .(((((...........((((..(((((((.........))))).))..))))..(((((........)))))................))))). ( -10.10, z-score = -0.36, R) >droSim1.chr2L 2105339 80 + 22036055 UUCGUUUUCAAAACAAAGAGCUGGCAAAA---------------CACUGGCUCAAAAUAUAUUAAAUAUUGUUCAACAUUAUAGAAACAAACGAA .((((((((........((((..(.....---------------..)..))))............(((.((.....)).))).))...)))))). ( -14.10, z-score = -3.07, R) >droSec1.super_121 19885 80 + 59987 AUCGUUUUCAAAACAAAGAGCUGGCAAAA---------------CACUGGCUCAAAAUAUAUUAAAUAUUGUUCAACAUUAUAGAAAUAAACGAA .((((((((........((((..(.....---------------..)..))))............(((.((.....)).))).))...)))))). ( -14.20, z-score = -3.07, R) >droYak2.chr2L 2123091 76 + 22324452 ---GUCUUUCUAAGAAAGAAAUUUUAAGU----------------UCGAUUUCAAAACUUCAUCUACAGGAACCAACGAAUUUUUAACACACAUA ---.((((((...))))))..((..((((----------------(((.((((...............))))....)))))))..))........ ( -6.46, z-score = 0.05, R) >consensus AUCGUUUUCAAAACAAAGAGCUGGCAAAA_______________CACUGGCUCAAAAUAUAUUAAAUAUUGUUCAACAUUAUAGAAACAAACGAA .((((((..........(((((((......................)))))))...............((((........))))....)))))). ( -6.30 = -5.68 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:21 2011