| Sequence ID | dm3.chr2LHet |
|---|---|
| Location | 56,457 – 56,517 |
| Length | 60 |
| Max. P | 0.897052 |
| Location | 56,457 – 56,517 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.42710 |
| G+C content | 0.47375 |
| Mean single sequence MFE | -16.04 |
| Consensus MFE | -9.43 |
| Energy contribution | -9.67 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2LHet 56457 60 + 368872 CUGAGCUAGCCGC-UGCAAUCCGUAGCGAGCGAAAUAAAGAAA-UCAGUUCGUUGCACUCAG (((((...(((((-(((.....))))))((((((....(....-)...)))))))).))))) ( -18.20, z-score = -2.12, R) >droSim1.chr2h_random 174285 55 - 3178526 CUGAGCUAGCCGC-UGCAAUCCGUAGCGAGCGAAAUAAGAAAA-UCAGUUCUUUACA----- ..(((((.(((((-(((.....)))))).)).......(....-.))))))......----- ( -15.20, z-score = -2.07, R) >droSec1.super_69 15092 56 + 174750 CUGAGCUAGCCGC-UGCAACCAGUAGCGAGCGAAAUAAAGAAAAUCAGUUCGUUACA----- ..(((((.(((((-(((.....)))))).))........(.....))))))......----- ( -15.70, z-score = -2.41, R) >droYak2.chr2h_random 1782177 61 - 3774259 CUGAGCUAGCCGCACGUAUUCCGUAGCGAGC-AGAUAAACAAAAUCAGUUCGUUACAAUGCA ....((.....))..(((((..(((((((((-.(((.......))).)))))))))))))). ( -16.80, z-score = -2.56, R) >droAna3.scaffold_13258 557078 55 - 1584923 GUGAGCUAGCCGC--GGCGUUUGUUGCGAGCAAAACAUAGCUAAACAGUUCGUUACA----- ..(((((...(((--(((....))))))(((........)))....)))))......----- ( -14.30, z-score = -0.05, R) >consensus CUGAGCUAGCCGC_UGCAAUCCGUAGCGAGCGAAAUAAAGAAAAUCAGUUCGUUACA_____ ......................(((((((((................)))))))))...... ( -9.43 = -9.67 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:04:43 2011