| Sequence ID | dm3.chr2R |
|---|---|
| Location | 990,381 – 990,439 |
| Length | 58 |
| Max. P | 0.861329 |
| Location | 990,381 – 990,439 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 60.64 |
| Shannon entropy | 0.70591 |
| G+C content | 0.51906 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -5.66 |
| Energy contribution | -6.34 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 990381 58 - 21146708 ---GUCCCUUCACUCAUAGCUAACGACGUUUCUCUCAUACUUAGCGGUGUAUUCGCCGCAC ---(((..................)))................((((((....)))))).. ( -10.87, z-score = -1.68, R) >droAna3.scaffold_13417 6856154 58 - 6960332 ---GUCACUCCAAGCUCCGUUUGCAUCAUUCCACUCAAACAUGGCGGUGUAUUCGCCGCAC ---...............(((((............)))))...((((((....)))))).. ( -12.50, z-score = -1.59, R) >droEre2.scaffold_4845 974902 58 - 22589142 GCUGUUGCUCUCAGACAUG---GCGCCAUUUCACUCAAACAUGGCGGUGUAUUCUCCGCAC ((....)).....((.(((---....))).))...........((((.(....).)))).. ( -11.10, z-score = 0.49, R) >droYak2.chr2L_random 3564280 57 + 4064425 ---AUUUUUACCUGGGCUUUGAGAGACAUUUCCUCCGUACG-GGUGGUGUCUCCGGUCCAC ---.........((((((..(.(((((((..(((......)-))..)))))))))))))). ( -20.40, z-score = -2.12, R) >droSec1.super_60 143961 58 + 163194 ---GUCGCUUCACUCAUAGCUGACGACGUUUCACUCAUACUUAGCUGUGUAUUCGCCGCAC ---((.((......(((((((((.................))))))))).....)).)).. ( -11.63, z-score = -0.80, R) >consensus ___GUCGCUCCAAGCACAGCUAGCGACAUUUCACUCAUACAUGGCGGUGUAUUCGCCGCAC ...........................................((((((....)))))).. ( -5.66 = -6.34 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:44 2011