| Sequence ID | dm3.chr2R |
|---|---|
| Location | 983,269 – 983,341 |
| Length | 72 |
| Max. P | 0.726093 |
| Location | 983,269 – 983,341 |
|---|---|
| Length | 72 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 58.13 |
| Shannon entropy | 0.68465 |
| G+C content | 0.55798 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -7.41 |
| Energy contribution | -8.60 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 983269 72 + 21146708 -----AGUGC-UGCGUUCUGACUCCUCCCCCUUCAAG-AUCUGCGUCCCCCAGAUUAAGUAGCCUUG-GUUUGUCCGGAG -----.(.((-(((((....))..............(-(((((.(....)))))))..))))))(((-(.....)))).. ( -11.70, z-score = 0.77, R) >droYak2.chr3h_random 576792 67 + 911842 ------------AGUCGUUAACUCCUCCCCAUCACAAGAUCUGUGUCCCACAGAUCAGAAAGCCUUA-GGCGGCCCGGGG ------------..............((((.......((((((((...)))))))).....(((...-...)))..)))) ( -21.70, z-score = -2.23, R) >droAna3.scaffold_13767 712206 67 + 1685616 -----AGUGC-CGGGUGGUAACUCCUACCCCUCUAAGAGUCUGCAUCCCGCAGAUCACUUGGCAGAAUGGUGA------- -----...((-(((((((......))))))(((((((.((((((.....))))))..))))).))...)))..------- ( -24.50, z-score = -1.90, R) >droMoj3.scaffold_6498 2820598 79 + 3408170 GGUGCUAUGCACUGGUGUUAACUCCUCCCCCU-UAAGUAUCUGCGUCCCGCAGAUUAGACGACCUUCUGGUCGACCGGAG (((((...)))))........((((.......-.....(((((((...)))))))....(((((....)))))...)))) ( -25.40, z-score = -2.25, R) >consensus _____AGUGC_CGGGUGUUAACUCCUCCCCCUCUAAG_AUCUGCGUCCCGCAGAUCAGAUAGCCUUA_GGUGG_CCGGAG .....................((((.............((((((.....))))))....(((((....)))))...)))) ( -7.41 = -8.60 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:40 2011