| Sequence ID | dm3.chr2R |
|---|---|
| Location | 979,335 – 979,432 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 979,335 – 979,432 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Shannon entropy | 0.42118 |
| G+C content | 0.33158 |
| Mean single sequence MFE | -18.68 |
| Consensus MFE | -8.26 |
| Energy contribution | -8.93 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 979335 97 - 21146708 CACCGCGAUAACAUUCCACCUUUU-AACAUGAACUCAGCACCAUCCGUGCUGAAUCGCUAAAUACAAAAGAAUAUAUAAAGAAGUAUAAAUUUGUAUA------------ ....(((((..(((..........-...)))...(((((((.....))))))))))))...(((((((....(((((......)))))..))))))).------------ ( -19.62, z-score = -4.12, R) >droEre2.scaffold_4929 4668482 110 + 26641161 CACCGCGAUAACAUUACACCUUCUAAAAACGGAGUCAGCAUCAUCGGUGCUGAUUUACUAAAAACAAAAGAAUAAAUUUAUACGUAUGUACACAUGUACAAAUGAUUAUA .......((((((((.............(((((((((((((.....)))))))))).((.........))............))).(((((....))))))))).)))). ( -20.50, z-score = -2.14, R) >droYak2.chr2L_random 2368583 110 - 4064425 CAUCGCGACAACAUUACACCUUCUAAAAACGGAUUCAUCACCAUCCGAAGUUAAUUGCUGAAAACAUGAGAAUAAAUUUGUAUGUUUGUACAUGUGUACAAAUGAUUAUA .(((......(((.......((((.....(((((........))))).(((.....))).........))))......)))..((((((((....))))))))))).... ( -15.92, z-score = 0.47, R) >consensus CACCGCGAUAACAUUACACCUUCUAAAAACGGACUCAGCACCAUCCGUGCUGAAUUGCUAAAAACAAAAGAAUAAAUUUAUAAGUAUGUACAUGUGUACAAAUGAUUAUA ....((((.............(((......)))((((((((.....))))))))))))............................(((((....))))).......... ( -8.26 = -8.93 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:40 2011