| Sequence ID | dm3.chr2R |
|---|---|
| Location | 973,678 – 973,806 |
| Length | 128 |
| Max. P | 0.684670 |
| Location | 973,678 – 973,806 |
|---|---|
| Length | 128 |
| Sequences | 5 |
| Columns | 132 |
| Reading direction | reverse |
| Mean pairwise identity | 62.95 |
| Shannon entropy | 0.63878 |
| G+C content | 0.48182 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.44 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 973678 128 - 21146708 -AGAAUGGAUGAGGGUCUGGUCAGGUCUACCCAA-GCGAGAAUGGUUUGAGAGGCCAAUAAGGUCUGUCAAAG-UGACAAUAGUUUGAUAGGCCGGUCAGGUCUACCAA-AGUGAGAAGCGUUUGAGAGGCC -.((..((((....))))..)).(((((.(.(((-(((.....(.((((..(((((.....(((((((((((.-((....)).))))))))))).....)))))..)))-).)......)))))).)))))) ( -42.00, z-score = -2.70, R) >droSim1.chr3L 19552156 115 - 22553184 -------------GGAAUGG-CAGGUAUACCAAA-GUUAGAAGAGUUUGAGAGGCCGAUCGGGUCUGCCAAAG-UAAGAAUGGUUUGAGGGGCCGGGUAGGUCUACCAA-AAUGAAAAGAGUUUGAGAGGCC -------------.......-..(((....((((-.((.......((((..(((((.(((.(((((..((((.-((....)).))))..))))).))).)))))..)))-).......)).))))....))) ( -30.44, z-score = -1.46, R) >droSec1.super_64 35054 101 - 179039 ----------------UUGG-CAGGUAUACCAAA-GUUAGAAGAG-----------AGUCGGGUCUGCCAAAG-UAAGAAUGGUUUGAGAGGCCGGGUAGGUCUACCAA-AAUGAAAAGAGUUUGAGAGGCC ----------------((((-(((....(((..(-.((......)-----------).)..))))))))))..-......(((((.....)))))....(((((..(((-(.(....)...))))..))))) ( -23.20, z-score = -0.99, R) >droYak2.chrU 5705931 130 + 28119190 AGAAGAGUUGUAGAGCCCGCUUAGGUGUGCUAAGUAUGAGAAGAGUUGUAGAGGCCGAUAAGGUCUGCUAAGGAUGAGGAGAGUUU-AGAGGCCGAUGAGCUUUGCCAAGAAUGGGAACAGUUU-AGAGGCC ....((..(((....(((((((((.....)))))).((.(.((((((.((..((((..((((.(((.((.......)).))).)))-)..))))..)))))))).))).....))).)))..))-....... ( -34.80, z-score = -1.88, R) >droEre2.scaffold_4929 2511710 100 + 26641161 --------------------UUAGGUCUACCAAA-GUGAGAAUGGUUUGAGAGGCCUUCUAGGUCUACCAAGC-UGAGAAGAGUUGGAGAGGCCUUUUAGGUCUACCAC-GGUGAGAAGAGUC--------- --------------------.....(((.(((..-(((.(...(..((((((((((((((((.(((.((....-.).).))).))))).)))))))))))..)..))))-..)).).)))...--------- ( -31.70, z-score = -1.23, R) >consensus ______________G_CUGGUCAGGUAUACCAAA_GUGAGAAGAGUUUGAGAGGCCAAUAAGGUCUGCCAAAG_UGAGAAUAGUUUGAGAGGCCGGUUAGGUCUACCAA_AAUGAGAAGAGUUUGAGAGGCC .......................((((.(((.............(((.....)))......(((((..((((...........))))..))))).....))).))))......................... (-11.10 = -11.44 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:39 2011