| Sequence ID | dm3.chr2R |
|---|---|
| Location | 931,256 – 931,337 |
| Length | 81 |
| Max. P | 0.880580 |
| Location | 931,256 – 931,337 |
|---|---|
| Length | 81 |
| Sequences | 3 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 61.73 |
| Shannon entropy | 0.56048 |
| G+C content | 0.49132 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -11.41 |
| Energy contribution | -12.30 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 931256 81 - 21146708 GGAAGUUUUUCAUCGCGGGGAAAGUGCAGUGAGGUAACAGCCCAACCUGUUACGACACCCUGCACCUAUACUCGCCUAUAC ..............(((((....((((((((..(((((((......)))))))..)))..))))).....)))))...... ( -24.50, z-score = -1.87, R) >droEre2.scaffold_4929 23233388 67 - 26641161 -----UAAUUCAACGCGGGAAAAGGGCAGUGAGGUAACAGCAUAACUUGUUACGACACCCUGCACCUAUAUU--------- -----.................(((((((((..(((((((......)))))))..)))..))).))).....--------- ( -14.90, z-score = -1.07, R) >droYak2.chrU 8079733 65 - 28119190 UGAACUAGUGCGACGCGGGAAAAGGGCAGUGAGG----------------UACGCCACCCUGCAGCUAUAGUUAGUUAAAA ..(((((..((...(((((.....(((.(((...----------------))))))..))))).))..)))))........ ( -17.00, z-score = -0.22, R) >consensus _GAA_UAAUUCAACGCGGGAAAAGGGCAGUGAGGUAACAGC__AAC_UGUUACGACACCCUGCACCUAUACU____UA_A_ ..............(((((.........(((..(((((((......)))))))..)))))))).................. (-11.41 = -12.30 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:38 2011