| Sequence ID | dm3.chr2R |
|---|---|
| Location | 925,190 – 925,308 |
| Length | 118 |
| Max. P | 0.609557 |
| Location | 925,190 – 925,308 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Shannon entropy | 0.32246 |
| G+C content | 0.51094 |
| Mean single sequence MFE | -40.42 |
| Consensus MFE | -28.92 |
| Energy contribution | -28.56 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 925190 118 + 21146708 UACCUGCCCUGAAUGGGUUGCCCAUUAUCGGGUAUGGAAUUCCGAAAUCUGGCCAACCAUUCAUACCCGGCAUGGCAAACGGCAUCGGAAACGGAGGAGGAUUAUUUCCUCCCCACUG-- ....((((.((((((((...)))))).(((((((((((.....(....)(((....)))))))))))))))).))))..(((....(....)((.((((((.....)))))))).)))-- ( -43.80, z-score = -2.31, R) >droSim1.chrU 5056660 120 + 15797150 UACCUGCCCUACAUGGAUUGCCCAUCAUCGGGUAUGGAAUUCCGAAACCUGGCCAUCCAUUCAUACUUGGCAUGGCAAAUGGCAUUGAAAACGGAGGAGGAUUGUUUCCUCCCCAAUGGU .(((((((...((.((..(((((......)))))(((....)))...))))((((((((........))).)))))....))))........((.((((((.....))))))))...))) ( -42.70, z-score = -1.78, R) >droSec1.super_165 59770 120 + 68140 UGCCUGCCCUAAAUGGAUUUCCCAUCAUCGGGUAUGGGAACCCAAAUCCAGGCCAACCAUUCAUAUUUGGCAUAGUAAAUGGCAUCGGAAACGGAGGUUGGUCGUUUCCUCCCCACCGGU .((((((((...((((.....))))....))))).((((((.........((((((((.........((.(((.....))).))(((....))).))))))))))))))........))) ( -37.30, z-score = -0.14, R) >droYak2.chr2h_random 2814398 117 - 3774259 UACCUGCCCUGAAUGGGUUGCCCAUCAUCGGGUAUGGAAUUCCGAAACCUGAUCAUUCGCUCAUACUUUGCAU---AAACGGCAUUGGAAACGGAGGAGGGUUAGUCCCUCCCCACUGAU ..((((((((((.((((...)))))))..))))).))..((((((..((.((....))((.........))..---....))..))))))..((.((((((.....))))))))...... ( -38.70, z-score = -1.42, R) >droEre2.scaffold_4841 55773 120 + 128025 UACCUGCCGCGAAUGGGUUACCCAUCAUCGGCUAUGGAAUUCCGAAACCGGACCAUCCAUUCAUACUCGACAUGGCAAACGGCACUGGAAACGGAGGAGGAUUGUUUUCUCCCCACUGGU .((((((((((((((((...)))))..)))((((((((..((((....))))...)))..((......)).)))))...)))))..(....)((.((((((.....))))))))...))) ( -39.60, z-score = -1.57, R) >consensus UACCUGCCCUGAAUGGGUUGCCCAUCAUCGGGUAUGGAAUUCCGAAACCUGGCCAUCCAUUCAUACUUGGCAUGGCAAACGGCAUUGGAAACGGAGGAGGAUUGUUUCCUCCCCACUGGU ....((((....((((.....))))..(((((((((((.....................)))))))))))..........))))..(....)((.((((((.....))))))))...... (-28.92 = -28.56 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:35 2011