| Sequence ID | dm3.chr2R |
|---|---|
| Location | 910,387 – 910,557 |
| Length | 170 |
| Max. P | 0.823068 |
| Location | 910,387 – 910,557 |
|---|---|
| Length | 170 |
| Sequences | 4 |
| Columns | 172 |
| Reading direction | reverse |
| Mean pairwise identity | 87.23 |
| Shannon entropy | 0.20798 |
| G+C content | 0.42622 |
| Mean single sequence MFE | -50.20 |
| Consensus MFE | -32.92 |
| Energy contribution | -34.92 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 910387 170 - 21146708 AACGGCGGCAGUGCCCGUACGGAACUGAUUAAGAAUUAAAGUGUAUCACAGCAGUACCGGUGUGAUCAACACUUAAUUUGUAACUGAACUUGCUAUGCAGAAGGCAAAUGAGCAAGUUUCACAGAAUAUAGAUUAAGACAGCUGUGCUCGCUCUCUUUU--GAGAGAGAGGA .(((((..((((..((....)).)))).............((..((((((.(......).))))))..)).(((((((((((.(((((((((((.(((.....)))....))))))))...)))..)))))))))))...))))).(((.(((((....--))))).))).. ( -54.90, z-score = -2.98, R) >droSim1.chr2h_random 726795 165 - 3178526 AACGGCG-----GCCCGUACCGAACAGAUUAAGAGUUAAAGUGCACCACAGCACUACCGGUGCGAUCAACACUUAAUUUGUAACUGAACUUGCUAUGCAGAAGGCAAAUGAGCAAGUUGCACAGAAUAAAGAUUAAAACAGCUGUGCUCGCUCUCUAUU--GAGAGAGAGGA .((((..-----..)))).((..((((((((((.(((....((((((...........))))))...))).)))))))))).....((((((((.(((.....)))....))))))))((((((.................))))))((.(((((....--))))).)))). ( -52.53, z-score = -3.35, R) >droSec1.super_81 116430 170 - 123496 AAUGGCGGCAGUGCCCGUACUGAACCGAUUAAAAGUUAAAGUGUAUCACAGCAGUACCGGUGCGAUUAACAUUUAAUUUGUAACUGACCUUGCUAUGGAGAAGGCAAAUGAGCAAGUUUUACAGAAUAAAGAUUAAAACAGCUGUGCUCGCUCUCUAUU--GAGAGAGAGGA ....(((((.(..((.((((((....(((...............)))....)))))).))..)..((((..((((.(((((((..(((.(((((...(......).....))))))))))))))).))))..))))....))))).(((.(((((....--))))).))).. ( -47.36, z-score = -1.89, R) >droYak2.chr2h_random 3321423 171 + 3774259 AAAAACGGUAGUGCCCGUACCGAACCGAUGGAAAGUAAAAGUGUAUCACAGCAGUAUCGGUGUGAUCAACACUUACUUUGUAACUGACGUUGCUAUGCAGAAGGCAAAUAAGCAAGUGUCACAAGAUAAAGAUUUAAA-AACUGUGCUCGCUCUCUAUUACGAGAGAGAGGA .....((((.(((....)))...))))((((.......((((((((((((.(......).))))))..)))))).((((((...((((((((((.(((.....)))....))))).)))))....)))))).......-..)))).(((.(((((......))))).))).. ( -46.00, z-score = -1.70, R) >consensus AACGGCGGCAGUGCCCGUACCGAACCGAUUAAAAGUUAAAGUGUAUCACAGCAGUACCGGUGCGAUCAACACUUAAUUUGUAACUGAACUUGCUAUGCAGAAGGCAAAUGAGCAAGUUUCACAGAAUAAAGAUUAAAACAGCUGUGCUCGCUCUCUAUU__GAGAGAGAGGA ....(((((.............................((((((((((((.(......).))))))..))))))..(((((....(((((((((.(((.....)))....))))))))).)))))...............))))).(((.(((((......))))).))).. (-32.92 = -34.92 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:34 2011