| Sequence ID | dm3.chr2R |
|---|---|
| Location | 812,744 – 812,848 |
| Length | 104 |
| Max. P | 0.746037 |
| Location | 812,744 – 812,848 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 54.15 |
| Shannon entropy | 0.77885 |
| G+C content | 0.51353 |
| Mean single sequence MFE | -36.48 |
| Consensus MFE | -10.68 |
| Energy contribution | -11.93 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 812744 104 - 21146708 GCCGAAGCAGGCAGAGAGGGAGAGCAAGAACGCGGUCUGACGUUCUCUGAGGGCAAAAGUUUCGAGUUAGUUG---AAGGUGAGGGUGCUCGAUCACCGAUUUGCGG-- ((....))..(((((..((((((((.(((......)))...))))))((((.((...(.((((((.....)))---))).)....)).))))....))..)))))..-- ( -28.80, z-score = 0.92, R) >droYak2.chrU 18649750 107 + 28119190 GUUGGGGUGAGCAGAGAGGGUGAGCAAGAGCUGGCUCUCUUGCUGUCGACGGUCAGUAGAGUCGAGUUGCUCUUU-GUCGACUUCUGAUGUUG-AAAUAUAUCUCUAGU ...((((((((((.(((((((.(((....))).))))))))))).((((((.((((..(((((((..........-.))))))))))))))))-)....)))))).... ( -41.00, z-score = -2.47, R) >droAna3.scaffold_13339 2512304 107 - 4599533 GUCGGAGUGAGCAGAGCGGGUGUGCAAGACCGUGCCCUAUGGCUUUCAGCGGUCAGUAGGGCCGGCUUGCUCUU--AUUCUCCGAUUUUUCCAUUUCGAUAUCGCGGGU (((((((((.(.((((..((...(((((.(((.(((((((((((......))))).)))))))))))))).)).--.)))).)((....)))))))))))......... ( -43.00, z-score = -2.18, R) >droPer1.super_1 9392284 109 + 10282868 GAAACAGUAGGCAGAGAGGGAUGGCAAGAAAGUGCUCUUCGGCCUUCGGUGGUCAGGUGAGCAGACUUGCUCAUCGAUAAUUUAGUUAUCUUAUAAAAAUGUUUCAAGG ((((((.............(((((((((....(((((.((((((......)))).)).)))))..))))).))))((((((...)))))).........)))))).... ( -33.10, z-score = -2.44, R) >consensus GUCGGAGUAAGCAGAGAGGGAGAGCAAGAACGUGCUCUAUGGCUUUCGGCGGUCAGUAGAGCCGACUUGCUCUU__AUAGUCUGGUUAUUCUAUAAAAAUAUCGCGAGU ...............((((..(((((((....((((((((((((......)))).))))))))..)))))))...........((....))..........)))).... (-10.68 = -11.93 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:33 2011