| Sequence ID | dm3.chr2R |
|---|---|
| Location | 786,438 – 786,490 |
| Length | 52 |
| Max. P | 0.998639 |
| Location | 786,438 – 786,490 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 62.18 |
| Shannon entropy | 0.53293 |
| G+C content | 0.51282 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -10.57 |
| Energy contribution | -11.80 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.43 |
| SVM RNA-class probability | 0.998639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 786438 52 - 21146708 UAUGGGGCUGCUCAGAAAGAGCGGUCCAUGGGCCCAGAAAGGGGACUCGUUA ....(((((((((.....)))))))))((((((((......))).))))).. ( -24.80, z-score = -3.64, R) >droSec1.super_81 14604 52 - 123496 UAUGGGGCUGCUCAGAAAGAGCGGUCCAUGAGUCCACAAAGAGGAGUCGUUA ....(((((((((.....)))))))))((((.(((.......))).)))).. ( -23.10, z-score = -4.63, R) >droMoj3.scaffold_6500 305404 52 + 32352404 UCUGGGCUUACAGAGGAAACCUGGACCGUUGAACCAAUGUAAUGAUGCAUUU ...((.....(((.(....))))..))........((((((....)))))). ( -9.20, z-score = -0.04, R) >consensus UAUGGGGCUGCUCAGAAAGAGCGGUCCAUGGGACCAAAAAGAGGACUCGUUA ....(((((((((.....)))))))))(((((.((.......)).))))).. (-10.57 = -11.80 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:32 2011