| Sequence ID | dm3.chr2R |
|---|---|
| Location | 755,239 – 755,305 |
| Length | 66 |
| Max. P | 0.710978 |
| Location | 755,239 – 755,305 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 50.51 |
| Shannon entropy | 0.71950 |
| G+C content | 0.56494 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -8.40 |
| Energy contribution | -7.30 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.91 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 755239 66 - 21146708 UCAGAGUACACGAGGUACGUGAGCUCCGUCGAGGUGGUGGUGCGAUCAUUCGUACUCCUUCGGUUG ...((((.((((.....)))).))))..((((((.(..(((((((....))))))))))))))... ( -22.70, z-score = -1.01, R) >droPer1.super_92 75011 63 - 190782 UCCGCGUCCACGAGGCUCGCGAGCU---GAAGAGCGGAGGAGCGAUUAUUCGCACCCCUUCAGUGA ..((((.((....))..)))).(((---(((....((.((.((((....)))).)))))))))).. ( -23.30, z-score = -1.08, R) >triCas2.chrUn_109 24376 66 - 51733 UCAAAAUACAGAGGGUUAGACCGUCUAGAGUUGGGGGGGGACUGGUGAUUGAAACCACCAGCGAGA ((.......(((.((.....)).)))...(((((.((....))(((.......))).))))))).. ( -18.50, z-score = -1.15, R) >consensus UCAGAGUACACGAGGUUCGAGAGCU__GAAAAGGCGGAGGAGCGAUCAUUCGAACCCCUUCAGUGA .............................(((((....((.((((....)))).)).))))).... ( -8.40 = -7.30 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:32 2011