Locus 2986

Sequence ID	dm3.chr2R
Location	752,440 – 752,553
Length	113
Max. P	0.976344

overview

Window 9

Location	752,440 – 752,553
Length	113
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	59.89
Shannon entropy	0.56408
G+C content	0.54240
Mean single sequence MFE	-45.03
Consensus MFE	-17.47
Energy contribution	-17.60
Covariance contribution	0.13
Combinations/Pair	1.41
Mean z-score	-2.48
Structure conservation index	0.39
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.95
SVM RNA-class probability	0.976344
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 752440 113 - 21146708
CAUGCUGCUGAAAGGUGCCUUGAGAC------GUGCGCCUACGGUGAGGUUUGCUGGAGCGAACCUUCCGUAUGUG-CGUAGCUGUCGGUACCUUGGCAUCACGGUUAGUGAAGGAAUGA
(((.(((((..((((((((....(((------((((((((((((.(((((((((....)))))))))))))).).)-))))..))))))))))))))).((((.....)))).)).))). ( -48.40, z-score =  -3.69, R)
>droAna3.scaffold_13230 1798603 113 - 3602488
AAUGCUGCUGAAAGGCAGAUUGUCCAG-----GUCCCUCGUU-GUCAGGCUCGACGGCUCCAGCAUAAGGUAUGCGAAACAGGUG-AAGUACCUGGGCGUGACCGUUGGAGAACGGUUGC
....(((((....)))))...((((((-----((.(.(((((-(((......))))))....(((((...))))).........)-).).))))))))(..((((((....))))))..) ( -44.70, z-score =  -2.25, R)
>droGri2.scaffold_15040 117870 119 - 162499
AAUGCUGCUUAAGGGCAGAUUGUCGCGUAGUCGACCCCCAUUGGUUAGGCUAAAUGGCGGCAGCCUGAGAUAUGUGUCGGAGGUG-AAAUACCUCGGCAUUGUGUUUGGCGAGAGGAUGU
....(((((....)))))..((((((.(((((((((......)))).)))))....))))))(((.((.(((.((((((.(((((-...)))))))))))))).)).))).......... ( -42.00, z-score =  -1.49, R)
>consensus
AAUGCUGCUGAAAGGCAGAUUGUCACG_____GUCCCCCAUUGGUCAGGCUAGAUGGCGCCAGCCUAAGGUAUGUG_CGCAGGUG_AAGUACCUCGGCAUCACGGUUGGAGAAAGGAUGA
....(((((....)))))..........................(((((((.((....)).)))))))(((((((....((((((....)))))).)))).)))................ (-17.47 = -17.60 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:31 2011