Locus 2985

Sequence ID dm3.chr2R
Location 752,269 – 752,388
Length 119
Max. P 0.872437
window4098

overview

Window 8

Location 752,269 – 752,388
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 59.66
Shannon entropy 0.57653
G+C content 0.53221
Mean single sequence MFE -42.11
Consensus MFE -21.73
Energy contribution -20.76
Covariance contribution -0.97
Combinations/Pair 1.59
Mean z-score -1.29
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.01
SVM RNA-class probability 0.872437
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 752269 119 - 21146708
AGCAUUGGCGCGUGUGCUUCGAGCCGACUGGGGCUUCAGUCCUCGAGCCAGGCGGACCAUAUAUGACGGACUCAUGGCACCUUGUGUGCUGUUUGGUGCCCCGGUAUGGUAUGACACCG
......(((((.((.(((.((((..((((((....))))))))))))))).))).(((((((((((.....))))((((((.............))))))...)))))))......)). ( -43.02, z-score =   0.28, R)
>droAna3.scaffold_13230 1798432 119 - 3602488
ACGAUUGCGCCGAAUUUUGAGAAGCGAAUGGGGCCUUAGCAGAAAAGCUGUUCGCACCAUAUAUGGUGGUCUUUUUGUUACUUGCGCAGCAACCGGAUCACCUGUGUGGAACGAUGCAG
.....((((.((...........((((((..(((.((......)).))))))))).(((((((.((((((((..(((((........)))))..)))))))))))))))..)).)))). ( -38.10, z-score =  -1.30, R)
>droGri2.scaffold_15040 117699 119 - 162499
ACAAGUGCGUCGGAUUUUGAGAAGUGACUGGGGCCUCAGCAGAACUGCUGCUCGCGCCGUAUACGAUGGUCUAUUUGUUGCCUGUGCAACUUAUGGAUCGUCGGUAUGGUGUAAAGUAG
...((.((.((((((((....))))..)))).))))(((((....)))))...(((((((((.(((((((((((..(((((....)))))..))))))))))))))))))))....... ( -45.20, z-score =  -2.86, R)
>consensus
ACAAUUGCGCCGAAUUUUGAGAAGCGACUGGGGCCUCAGCAGAAAAGCUGCUCGCACCAUAUAUGAUGGUCUAUUUGUUACUUGUGCAACAUAUGGAUCACCGGUAUGGUAUGAAGCAG
.......................((((((((................))))))))(((((((.((((((((((.((((.......)))).)...))))))))))))))))......... (-21.73 = -20.76 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:30 2011