| Sequence ID | dm3.chr2R |
|---|---|
| Location | 712,537 – 712,648 |
| Length | 111 |
| Max. P | 0.731293 |
| Location | 712,537 – 712,648 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 71.38 |
| Shannon entropy | 0.39030 |
| G+C content | 0.37485 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -19.14 |
| Energy contribution | -16.60 |
| Covariance contribution | -2.54 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 712537 111 - 21146708 AAGACAAAGACUAAAGACAAAUAUUCGAUUGAUAUCAUUUCAUAUGGAACCGACAUUUAGGUAAUAUCAAAUCUAUUGCCGACCUGGGGUCAUUCCUCCAGGUCCUCGGCA .......................(((.(((((.......))).)).)))((((......(((((((.......)))))))(((((((((......))))))))).)))).. ( -29.10, z-score = -2.12, R) >droYak2.chrU 23651072 103 - 28119190 -----AAGAAUUAAACUC--AUAAUUGAUCGUUAUUCUUCCACAUGGAAUUAAUAAUUAGGUAAUAUGGAACCAAGUGCUGAACAGGAAGCAUUAUUCCUGGUCAU-GGCA -----...........((--(((.(((((..(((...((((....)))).)))..)))))....)))))......((..(((.((((((......)))))).))).-.)). ( -20.40, z-score = -0.48, R) >droEre2.scaffold_4929 26109938 103 - 26641161 -----AAGAACUAAAUUC--GUAUUUGAUCGUUAUUCUUCCACAUGGAAUUAAUAAUUGGGUAAUAUCGAGCCGAGUGCUGACCAGGAGGCAUUUUUCCUGAUCAU-GGCA -----...........((--(((((..((..(((...((((....)))).)))..))..))))....)))((((.....(((.(((((((....))))))).))))-))). ( -24.10, z-score = -0.67, R) >consensus _____AAGAACUAAACUC__AUAUUUGAUCGUUAUUCUUCCACAUGGAAUUAAUAAUUAGGUAAUAUCGAACCAAGUGCUGACCAGGAGGCAUUAUUCCUGGUCAU_GGCA ..............................((((((.((((....))))..))))))..(((........)))...((((((.((((((......)))))).))...)))) (-19.14 = -16.60 + -2.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:26 2011