| Sequence ID | dm3.chr2R |
|---|---|
| Location | 693,376 – 693,480 |
| Length | 104 |
| Max. P | 0.557012 |
| Location | 693,376 – 693,480 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 56.98 |
| Shannon entropy | 0.60854 |
| G+C content | 0.51140 |
| Mean single sequence MFE | -37.97 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.67 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 693376 104 - 21146708 AAGUCGUGGGGAACCCAUCCACGCAUAAUAAGAUGGCUGUACCUCAUGGUAGUCAGACUUAUACUAACUUAAGGGG-CUUGGGGUGAUAGAGCACGCCCUAGCAC------------ ..(.((((((.......)))))))...(((((.(((((..(((....))))))))..))))).............(-((.((((((........)))))))))..------------ ( -30.90, z-score = -0.46, R) >droPer1.super_278 18236 117 - 27293 AGCACAUGGGGCCUGUCACCUGCUCUAAUGCACUGGAUCUACAUCUCGGUGGUGCGACCAACUCUGCUGUAUGGAGCCUUAGUGUGGUGGCAGGCUACUGAAAAGAAGACAUACCAU .....(((((((((((((((.((.((((..((((((((....))).)))))..((..(((((......)).))).)).)))).))))))))))))).((....))........)))) ( -41.10, z-score = -1.26, R) >droYak2.chr3R 141168 117 - 28832112 AGCACAUGGGGCCUCUCACUCGCUCUAAUGCACUGGGUUUACAUCUCGGUGGUGCAUCCAACUCUGAUGUAUGGAGUCUUAGUGUGGUGGGAGGCUAUGGAAAGGAAGACCUACAAC ....(((..((((((((((.(((.((((..(((((((.......)))))))(((((((.......)))))))......)))).))))))))))))))))...(((....)))..... ( -41.90, z-score = -1.85, R) >consensus AGCACAUGGGGCCUCUCACCAGCUCUAAUGCACUGGAUCUACAUCUCGGUGGUGCGACCAACUCUGAUGUAUGGAG_CUUAGUGUGGUGGAAGGCUACCGAAAAGAAGAC_UAC_A_ ..........((((((((((.((((((.((((.(((....((......))((.....))....))).))))))))))........))))))))))...................... (-15.76 = -15.67 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:25 2011