| Sequence ID | dm3.chr2R |
|---|---|
| Location | 679,921 – 680,029 |
| Length | 108 |
| Max. P | 0.972217 |
| Location | 679,921 – 680,029 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 51.14 |
| Shannon entropy | 0.79939 |
| G+C content | 0.48460 |
| Mean single sequence MFE | -38.65 |
| Consensus MFE | -8.40 |
| Energy contribution | -10.78 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 679921 108 - 21146708 UACGGGGCACUGCCGACUUCGCAUUUGC---AUAAGAUUGGCAUUGCA-GACAGUGAACUCUGUCGCUUCUGCUGCAUGGAGGAG------GAGAGCUCUGCACAUAUUAUAUGUGAC ..((((((.((.((..((((((....))---.........(((..(((-((.(((((......)))))))))))))..))))..)------))).))))))((((((...)))))).. ( -38.50, z-score = -2.43, R) >droYak2.chrU 10814141 118 - 28119190 UACAGGUCACUGCCUAGCUGCGGCACACGCAGUCAAACUGGGCAUUACCGACAACGCCAAAUGCCGGAAAUGUGAUGAAUUUGAGGCAAUCGAAACCUUGGAGCAUCUCAUUUGCAAA ....(((...((((((((((((.....))))).....)))))))..)))................(.(((((.((((..((..(((.........)))..)).)))).))))).)... ( -36.20, z-score = -1.64, R) >droPer1.super_146 11824 118 + 80581 UACAGGUCACUGUCUGGCUGCUGCACAUGCAGCAAAGCUAGGCAUCACCAACAGAGACAGUUUUAGGAAAUGUGAUGAACCUGGGGCUAUCGAAACCCUGGAACAUCUCAUCUGCUAC ....(((...((((((((((((((....)))))..)))))))))..)))....((((..((((((((.....(((((..(....)..)))))....)))))))).))))......... ( -42.30, z-score = -3.07, R) >droGri2.scaffold_15126 4410455 112 + 8399593 GACAGGACACUGUAGACUAAGGAGUCACCUGAGAAAAUUGGGUAUACACAGUAGCGAUCUCUGCAGGUUUUGUGAAAAAGAGGAG------GAAUCCUCGAUGCACAUCCUGACAGAA .....(..(((((.((((....))))(((..(.....)..)))....)))))..)....((((((((...((((.....(((((.------...)))))....)))).)))).)))). ( -37.60, z-score = -3.18, R) >consensus UACAGGUCACUGCCGACCUGCGACACACGCAAUAAAACUGGGCAUAAACAACAGCGACAUCUGCAGGAAAUGUGAUAAAGAGGAG______GAAACCUCGGAACAUAUCAUAUGCGAA .(((((((........((((((.....))))))...............((((((......)))))))))))))......(((((((.........)))))))................ ( -8.40 = -10.78 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:24 2011