| Sequence ID | dm3.chr2R |
|---|---|
| Location | 642,545 – 642,641 |
| Length | 96 |
| Max. P | 0.657906 |
| Location | 642,545 – 642,641 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 61.40 |
| Shannon entropy | 0.53043 |
| G+C content | 0.49059 |
| Mean single sequence MFE | -30.37 |
| Consensus MFE | -13.01 |
| Energy contribution | -12.03 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.657906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 642545 96 - 21146708 GUUAGCAAUUCCAAGCUGAAAUCACUCCACAACGGAUUAAUUGAAUUGCACCAAAUCUUUUUUGGCUGAUGAUCUUAGCAACAUUUGAGGAUUUGC ....((((.(((..(((((.((((.(((.....)))............(((((((.....))))).)).)))).)))))..(....).))).)))) ( -21.80, z-score = -1.56, R) >dp4.chr4_group2 150525 93 + 1235136 UGCAGACGUACUUGGCUGCACAUUCUCCGAGGC-GAUGAAUUUGGCU--ACCGAAUCUGCAUCGCCAGCAGCUGUCGUUGCCUUUGGAGUGGCAAA (((((.((....)).)))))....(((((((((-((((.((((((..--.))))))...))))))).(((((....)))))..))))))....... ( -35.30, z-score = -1.92, R) >droPer1.super_128 25759 93 - 112355 UGCAGACGUACUUGGCUGCACAUUCUCCGAAGC-GAUGAAUUCGGCU--ACCGAAUCUGCAUCGCCAGCAGCUGUCGUUGCCCUUGGGGUGGCAAA ....(((......((((((...(((...)))((-((((.((((((..--.))))))...))))))..)))))))))((..(((...)))..))... ( -34.00, z-score = -1.34, R) >consensus UGCAGACGUACUUGGCUGCACAUUCUCCGAAGC_GAUGAAUUCGGCU__ACCGAAUCUGCAUCGCCAGCAGCUGUCGUUGCCAUUGGAGUGGCAAA .((((..........)))).....((((((....(((((...(((((....(((.......))).....))))))))))....))))))....... (-13.01 = -12.03 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:20 2011