| Sequence ID | dm3.chr2R |
|---|---|
| Location | 626,035 – 626,088 |
| Length | 53 |
| Max. P | 0.700756 |
| Location | 626,035 – 626,088 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.34884 |
| G+C content | 0.32285 |
| Mean single sequence MFE | -11.11 |
| Consensus MFE | -7.61 |
| Energy contribution | -6.73 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 626035 53 - 21146708 UGCAGCAUAAAGUUUUU------------AUUGAAAGUUCAGAAAG-UUUC-AAAGAAAAGCUUCUG ..(((....((((((((------------.((((((.((....)).-))))-))..))))))))))) ( -9.10, z-score = -0.66, R) >droSim1.chrU 3827499 55 - 15797150 UCCAGCAUAAAGCUUUU------------AUCGAAAGUUCGGUAAUUUUCCGAAAGAAAAGCUUCUG ..(((....((((((((------------..(....)(((((.......)))))..))))))))))) ( -13.00, z-score = -2.51, R) >droYak2.chr2h_random 1958886 66 + 3774259 UUCAGCAUCAAGCUUUUAUUCUAAACAUAAUUGAAAGUUCAAGAAGUUUUC-ACAGAAAAGCUUCUG ..........((((((((.............))))))))..(((((((((.-.....))))))))). ( -11.22, z-score = -1.42, R) >consensus UCCAGCAUAAAGCUUUU____________AUUGAAAGUUCAGAAAGUUUUC_AAAGAAAAGCUUCUG ..(((....((((((((.............((((....))))..............))))))))))) ( -7.61 = -6.73 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:19 2011