| Sequence ID | dm3.chr2R |
|---|---|
| Location | 508,800 – 508,898 |
| Length | 98 |
| Max. P | 0.591263 |
| Location | 508,800 – 508,898 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 50.00 |
| Shannon entropy | 0.70696 |
| G+C content | 0.41954 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -6.58 |
| Energy contribution | -5.03 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 508800 98 + 21146708 GCGCGGAUAUAGGUGAGUAACGGACUGUU--GCCCCUAAUUUGCGCCAGUUUGCUGUAAGUUCCAUCUUACUCUUGACAUAUUGACAUUGUUAAAAUGCA ((((((((.((((.(.(((((.....)))--))))))))))))))).....(((.(((((......)))))..((((((.........))))))...))) ( -27.40, z-score = -1.96, R) >droSim1.chr3R 27505096 98 - 27517382 UCGCGGAUAUAGGUAACUAACAGACUGUU--GCCCCUAAUUUGCGCCAGUUUGUUGUUAGUGCCAUGUCACAUUUGACAUACUGCAAUUUUUAAAAUGGA ..((((.....((((..((((((((((.(--((.........))).))))))))))....))))((((((....)))))).))))............... ( -28.90, z-score = -2.76, R) >droWil1.scaffold_181145 1191229 81 + 2682060 ACAUAGACCAAGUUCGUCAUCGGGGUCAUCAGAUUCCAGUAUAUAU-GGUCUGCUGUUGACCAGAUAUUCUGCCUC-CAUAAA----------------- .....((((..(........)..)))).........(((.((((.(-((((.......))))).)))).)))....-......----------------- ( -18.10, z-score = -0.47, R) >consensus ACGCGGAUAUAGGUAACUAACGGACUGUU__GCCCCUAAUUUGCGCCAGUUUGCUGUUAGUCCCAUAUUACACUUGACAUAAUG__AUU_UUAAAAUG_A ((((((((...(((....(((.....)))..)))....))))))))...................................................... ( -6.58 = -5.03 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:17 2011