| Sequence ID | dm3.chr2R |
|---|---|
| Location | 454,487 – 454,597 |
| Length | 110 |
| Max. P | 0.953312 |
| Location | 454,487 – 454,597 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 64.72 |
| Shannon entropy | 0.48190 |
| G+C content | 0.36663 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -13.37 |
| Energy contribution | -12.93 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 454487 110 - 21146708 UAUUUUUCGUGACUGCGAAGUCAAUCAAGUCAGGCAGUUUAUUGAGGCCUGAUGGCCAGUAUGUGGGACUCCCAGGGGAAACAUGAUCAAGUUUAUUAGUGGCUUCAAUU .........(((((....))))).....(((((((..(.....)..)))))))(((((.(((.((((...)))).)(....)..............)).)))))...... ( -29.30, z-score = -0.52, R) >dp4.Unknown_group_7 33702 106 - 144021 UAUUCUUUGUCACUUCAAUGUCUAUCAAAAUUAAAGCUUUUUGGAGUUUCUAUGAUUUCUCUUUGAAACUCU----ACUCAUAUUGCGCGAGCUAUUCGUGGCACUUAUU .......((((((............................(((((((((...((....))...))))))))----)........((....)).....))))))...... ( -21.90, z-score = -2.71, R) >droPer1.super_3 6351511 105 + 7375914 UAUUCUUUGUCACUACAAUGUCUAUCAAAAUUAAAGCUUUUUGGAGUUUCUAUGAUUUCUC-UUGAAACUCU----ACUCAUAUUGCGCGAGCUAUUCGUGGCACUUAUU .......((((((............................(((((((((...((....))-..))))))))----)........((....)).....))))))...... ( -21.60, z-score = -2.63, R) >consensus UAUUCUUUGUCACUACAAUGUCUAUCAAAAUUAAAGCUUUUUGGAGUUUCUAUGAUUUCUCUUUGAAACUCU____ACUCAUAUUGCGCGAGCUAUUCGUGGCACUUAUU ........(((((..............................(((((((...((....))...)))))))..............((....)).....)))))....... (-13.37 = -12.93 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:16 2011