| Sequence ID | dm3.chr2R |
|---|---|
| Location | 441,820 – 441,913 |
| Length | 93 |
| Max. P | 0.877258 |
| Location | 441,820 – 441,913 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 59.01 |
| Shannon entropy | 0.56064 |
| G+C content | 0.40860 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -10.86 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 441820 93 - 21146708 GUUCGUUCAAGGUAGUUAUUUUCUGUUCUUCCCGAGUAGAAGUCGACUUUUGUGUUAGAGAAUUCACAGAUUUAAUUCUCGAUUUUAAGGAAC-- ((((.((.(((((((((..(((((((((.....)))))))))..)))).........(((((((.........))))))).))))))).))))-- ( -17.80, z-score = -0.18, R) >dp4.Unknown_singleton_1261 3019 93 + 6670 GUAUAUU--GGGUAGUCAUUUCUAGCCACUGUUGCAAUGCCUGAAAUUUCAUUAGUCCGGCAGUGGUUUUUUGAAGACUGAGGUGUACGACUCGU (((((((--...(((((.((...(((((((((((..((...(((....)))...)).)))))))))))....)).))))).)))))))....... ( -27.40, z-score = -1.95, R) >droPer1.super_100 81226 93 + 203787 GUAUAUU--GGGUAGUCAUUUCUAGCCACUGUUGCGAUGCCUGAAAUUUCAUUAGUCCGGCAGUGGUUUUUUGAAGACUGAGGUGUACGACUCGU (((((((--...(((((.((...(((((((((((.(((...(((....)))...))))))))))))))....)).))))).)))))))....... ( -32.30, z-score = -3.42, R) >consensus GUAUAUU__GGGUAGUCAUUUCUAGCCACUGUUGCGAUGCCUGAAAUUUCAUUAGUCCGGCAGUGGUUUUUUGAAGACUGAGGUGUACGACUCGU (((((((...(((..(((.....(((((((((((.((((..........))))....)))))))))))...)))..)))..)))))))....... (-10.86 = -11.77 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:15 2011