| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,129,762 – 2,129,855 |
| Length | 93 |
| Max. P | 0.921590 |
| Location | 2,129,762 – 2,129,855 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 85.88 |
| Shannon entropy | 0.28498 |
| G+C content | 0.47324 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.40 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2129762 93 + 23011544 --UUACCCCCCCCCUUUAC-CCUCCUUUCAAGGACUUUU-CCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA --((((..(((........-..((((....)))).....-......(((((((((.((......)).)))))))))......)))..))))...... ( -24.50, z-score = -2.28, R) >droAna3.scaffold_12916 9835942 93 - 16180835 ----UACCCCGUUACCAUCCUCACCUUUCAAGGACUUUAUCCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA ----......(((((..((((.........)))).....(((.((((((((((((.((......)).)))))))))....)))))).)))))..... ( -24.30, z-score = -2.00, R) >droEre2.scaffold_4929 2164060 92 + 26641161 ----UUACCCCCCCUUCACGGCACCUUUCAAGGACUUUU-CCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA ----((((..(((......(((((.......(((....)-))........(((((.((......)).)))))))))).....)))..))))...... ( -24.40, z-score = -1.41, R) >droYak2.chr2L 2101168 93 + 22324452 ----UUCCCCCUUCUCCACGGCACCUUUCAAGGACUUUUUCCGCAUGCAUUCGCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA ----......((((.(((.(((((.(..((.(((.....)))((.(((....))).)).........))..))))))....)))))))......... ( -23.60, z-score = -1.00, R) >droSec1.super_14 2059293 96 + 2068291 CUCCCCCCUCCCCCUUCCCACCACCUUUCAAGGACUUUU-CCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA .............(((((((...........(((....)-))....(((((((((.((......)).))))))))).....)))))))......... ( -28.50, z-score = -3.37, R) >droSim1.chr2L 2083208 95 + 22036055 -UUCCCCCUCCCCCUUCCCACCACCUUUCAAGGACUUUU-CCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA -............(((((((...........(((....)-))....(((((((((.((......)).))))))))).....)))))))......... ( -28.50, z-score = -3.52, R) >droPer1.super_1 4485979 96 - 10282868 -UCCUGCCUUCAGCCCUGCCGCACCUUUCAAGGACUCUUUCCGCAUGCAUUCCCAAGUAGUGGAACAUGGGAGUGCCAUUAUGGAAAGUAAUAAACA -((((.......((......))........))))..(((((((...(((((((((.((......)).))))))))).....)))))))......... ( -26.16, z-score = -1.08, R) >dp4.chr4_group3 7377374 96 - 11692001 -UCCUGCCUUCAGCCCUACCGCACCUUUCAAGGACUCUUUCCGCAUGCAUUCCCAAGUAGUGGAACAUGGGAGUGCCAUUAUGGAAAGUAAUAAACA -((((.......((......))........))))..(((((((...(((((((((.((......)).))))))))).....)))))))......... ( -26.16, z-score = -1.61, R) >consensus ___CUCCCCCCCCCUCCACCGCACCUUUCAAGGACUUUU_CCGCAUGCAUUCCCAAGUAGUUGAACAUGGGAGUGCCAUUAUGGGAAGUAAUAAACA ........................(((((..((.......))....(((((((((.((......)).))))))))).......)))))......... (-19.46 = -19.40 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:18 2011