| Sequence ID | dm3.chr2R |
|---|---|
| Location | 387,940 – 388,048 |
| Length | 108 |
| Max. P | 0.803622 |
| Location | 387,940 – 388,048 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 65.03 |
| Shannon entropy | 0.49163 |
| G+C content | 0.53797 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -12.63 |
| Energy contribution | -14.30 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 387940 108 + 21146708 GCACUGUCCUCGUCGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCCUUGACGGCCUUUCCUUGGC-UGUCCUGAGCAAACGCUCCUCUCUGCGAUUGUCUUAUAAGU ...........(((((.((((((.......))))))..))))).......(((((((.......)))-)))).(((((((.(((........))).))).))))..... ( -33.00, z-score = -2.10, R) >droSim1.chr2h_random 1176788 89 - 3178526 GCUUCGUCCUCGUCGAAGUAUGGAGACAACCAAUACAGUCGGCUGCCAUUAGCGGACUUUCCUUGGCGUCGUUCCGACGCAAGCUCUAC-------------------- ((((((.......)))))).(((((.(...(((...((((.((((....)))).))))....)))((((((...))))))..)))))).-------------------- ( -29.40, z-score = -1.93, R) >droEre2.scaffold_4845 984216 95 + 22589142 -------------CGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCAUUGACGGCCUUUCCUUGGC-UGUCUUCAGCAAACGCUUCUCGCUGCGAUUGCCUUAUCAGU -------------(((.((((((.......))))))..)))((((.....(((((((.......)))-))))....((((.(((........))).)))).....)))) ( -31.90, z-score = -2.38, R) >consensus GC___GUCCUCGUCGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCAUUGACGGCCUUUCCUUGGC_UGUCUUCAGCAAACGCUCCUC_CUGCGAUUG_CUUAU_AGU ...........(((((.((((((.......))))))..)))))(((....(((((((.......))).))))....))).............................. (-12.63 = -14.30 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:14 2011