| Sequence ID | dm3.chr2R |
|---|---|
| Location | 383,256 – 383,351 |
| Length | 95 |
| Max. P | 0.842123 |
| Location | 383,256 – 383,351 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 72.82 |
| Shannon entropy | 0.37738 |
| G+C content | 0.54540 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -14.28 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 383256 95 + 21146708 CUGUCCUCGUCGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCCUUGACGGCCUUUCCUUGGC-UGUCCUGAGCAAACGCUCCUCUCUGCGAUUG ........(((((.((((((.......))))))..)))))(((.(..(((((((.......)))-))))..).)))..(((........))).... ( -32.80, z-score = -3.26, R) >droSim1.chr2h_random 1176791 86 - 3178526 UCGUCCUCGUCGAAGUAUGGAGACAACCAAUACAGUCGGCUGCCAUUAGCGGACUUUCCUUGGCGUCGUUCCGACGCAAGCUCUAC---------- ..((((..(((((.((((((......)).))))..))))).((.....))))))....((((.(((((...)))))))))......---------- ( -25.70, z-score = -1.03, R) >droEre2.scaffold_4845 984207 94 + 22589142 CAAUACUU-CCGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCAUUGACGGCCUUUCCUUGGC-UGUCUUCAGCAAACGCUUCUCGCUGCGAUUG ........-((((.((((((.......))))))..)))).(((....(((((((.......)))-))))....)))..(((........))).... ( -30.30, z-score = -2.91, R) >consensus CAGUCCUCGUCGAAGUAUGGUGACAACCCAUACAGUCGGCUGCCAUUGACGGCCUUUCCUUGGC_UGUCUUCAGCAAACGCUCCUC_CUGCGAUUG ........(((((.((((((.......))))))..)))))(((....(((((((.......))).))))....))).................... (-14.28 = -15.40 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:10 2011