| Sequence ID | dm3.chr2R |
|---|---|
| Location | 322,069 – 322,160 |
| Length | 91 |
| Max. P | 0.642840 |
| Location | 322,069 – 322,160 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 68.88 |
| Shannon entropy | 0.52882 |
| G+C content | 0.38929 |
| Mean single sequence MFE | -14.24 |
| Consensus MFE | -6.84 |
| Energy contribution | -7.20 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 322069 91 + 21146708 ----------CGGGAGAAUAGACGUUGAUAACUUUAUUCUCUUAAACUUCGCUGUUAAGCUAUCCCAAUCUGCCUAUAUAAACCCAGACAUGUCCUCAUAC ----------.(((((((((((.((.....)))))))))...........(((....)))..))))..((((............))))............. ( -14.90, z-score = -0.98, R) >droSim1.chrU 2277763 91 + 15797150 ----------CGGGAGAAUAGACGUUGAUAACUUUAUUCUCUUAAACUUAGCUCUUAAGCUAUCCCAAUCCGCCUAUAUAAACCCAAUCAUGUCCCUAUAC ----------((((((((((((.((.....))))))))))).......(((((....))))).......)))............................. ( -15.20, z-score = -1.87, R) >droSec1.super_62 44176 91 - 174595 ----------CGGGAGAAUAAACGUUGAUAACUUUAUUCUCUUAAACUUCGCUCUUAAGCUAUCCCAAUCCGCCUAUAUAAACCCAAACAUGUCCCCAUAC ----------((((((((((((.((.....))))))))))).........(((....))).........)))............................. ( -12.90, z-score = -1.94, R) >droYak2.chr2L 884336 87 - 22324452 -----------GAGAGAAUAGACGUU---UACUUAAUUCUCUUAAACUUCGCUCCUAAGCUAUCCCAAUCUGCCUAUAUAAAUUCAAACAUGCCUCCAUGC -----------((((((((.((.(..---..))).)))))))).......(((....)))............................((((....)))). ( -9.60, z-score = -0.79, R) >droWil1.scaffold_181148 762174 92 + 5435427 UUUCCCCUUUGGAAAGACCAGAUAUU--UAAUUAUAUAUUCUUGAUCAGCAUGAUCUG--UAUGUGCGUCAGUCUGGAUCAACGCAAACUCCUCCU----- (((((.....)))))((((((((...--....(((((((....((((.....)))).)--)))))).....)))))).))................----- ( -18.60, z-score = -1.20, R) >consensus __________CGGGAGAAUAGACGUUGAUAACUUUAUUCUCUUAAACUUCGCUCUUAAGCUAUCCCAAUCCGCCUAUAUAAACCCAAACAUGUCCCCAUAC ...........(((((((((((.((.....))))))))))))).......................................................... ( -6.84 = -7.20 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:01:02 2011