Locus 2957

Sequence ID dm3.chr2R
Location 117,862 – 117,963
Length 101
Max. P 0.929771
window4059

overview

Window 9

Location 117,862 – 117,963
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 56.60
Shannon entropy 0.73966
G+C content 0.59536
Mean single sequence MFE -36.83
Consensus MFE -13.59
Energy contribution -17.40
Covariance contribution 3.81
Combinations/Pair 1.57
Mean z-score -1.55
Structure conservation index 0.37
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.35
SVM RNA-class probability 0.929771
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 117862 101 + 21146708
CGAUCCGUGCACCCCCAUGAGCUGCAUCGACGCUUCGUUGGCGUCAGCCUUUAAGCUUUCGAUGACCAAUGUUGGCGACGAGAAGGUCUGCACGACGGCGA
((...((((((.......((.((...(((.((((.(((((((((((((......)))...)))).))))))..)))).)))..)).))))))))....)). ( -34.21, z-score =  -0.62, R)
>droAna3.scaffold_13247 134497 84 + 151219
CGACCCUUGCUGUCCUACCAGUCGGAUCAGUGCAUCCUUGGCAAGGUCCUUGGGCCUCUCCGUCACAAGCGUCGGGACCGAUGG-----------------
.(((....(((((((........))).))))........((..(((((....)))))..))))).....(((((....))))).----------------- ( -26.70, z-score =   0.25, R)
>droMoj3.scaffold_6498 989599 101 - 3408170
CGAUCCGUGUAGCCCUACUACUCGGAUCCAUGCUUCAUUGGCAAGGGCCAUGGGUCUUUCCGCCACUAGCGUGGGUCCGGGAGAGGUUUGCACGGCGACCA
((..((((((((.(((.((.((((((((((((((....(((((((((((...)))))))..))))..))))))))))))))))))).)))))))))).... ( -53.70, z-score =  -5.01, R)
>droVir3.scaffold_12954 1857202 101 - 2014198
AGACUCGUGCUGUCCGGUAAGUCUUAUCGACGCAUCCUUGGCAAAGGCCUCCGGGCUAUCCGUCACCCGCGUCGGUAAAGACAACGCUUGCUCGGCCAUUA
......(.((((.(.(((..(((((((((((((......(((....)))...(((..........))))))))))).)))))...))).)..))))).... ( -32.70, z-score =  -0.82, R)
>consensus
CGACCCGUGCAGCCCUACAAGUCGGAUCGACGCAUCCUUGGCAAGGGCCUUGGGGCUUUCCGUCACCAGCGUCGGUAACGAAAAGGUUUGCACGGCGAC_A
.....(((((((.(((....(((((((((((((......(((....))).((((....))))......)))))))))).))).))).)))))))....... (-13.59 = -17.40 +   3.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:58 2011