| Sequence ID | dm3.chr2R |
|---|---|
| Location | 76,418 – 76,501 |
| Length | 83 |
| Max. P | 0.506250 |
| Location | 76,418 – 76,501 |
|---|---|
| Length | 83 |
| Sequences | 4 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 73.69 |
| Shannon entropy | 0.42269 |
| G+C content | 0.48896 |
| Mean single sequence MFE | -16.90 |
| Consensus MFE | -9.40 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 76418 83 - 21146708 CACAGCAAGUCGCCUGCGUGUUGUCUCUUUGGCAGUUCUCACCAGACUUAUUUACUCAAGCGUCGCCUUCUCGAUGCUAUUCU ......(((((...((.(..(((((.....)))))..).))...))))).........(((((((......)))))))..... ( -19.90, z-score = -1.46, R) >droSim1.chr2h_random 123402 78 - 3178526 -----CACUUCAACUGCGUAUUGUCCCUUCGAUCGUUCAAUCCAGACUAAUUCACUCAAGCGUCGCCCUCUCGAUGCUUUUCU -----........(((.(.((((..(........)..))))))))............((((((((......)))))))).... ( -13.00, z-score = -1.93, R) >droSec1.super_69 33732 83 - 174750 CACAGCAAGUCGCCUGCGUAUUGUCCCUUCGAUCGUUCAAACCAGACUAAUUCACUCAAGCGUCGCCCUCUCGAUGCUUUUCU .......((((....(((.((((......)))))))........)))).........((((((((......)))))))).... ( -16.00, z-score = -1.42, R) >droEre2.scaffold_4732 91182 81 + 163109 CACAGCAAGUCGUCUGCGUGUUGUGCGUUUAACCGUUCUCACUGGACUAACUUCAGUGAGCGUCACUCUCUUACUCCUUUU-- (((((((.((.....)).)))))))............(((((((((.....))))))))).....................-- ( -18.70, z-score = -0.88, R) >consensus CACAGCAAGUCGCCUGCGUAUUGUCCCUUCGACCGUUCAAACCAGACUAAUUCACUCAAGCGUCGCCCUCUCGAUGCUUUUCU .......((((....(((.((((......)))))))........)))).........((((((((......)))))))).... ( -9.40 = -9.53 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:57 2011