| Sequence ID | dm3.chr2R |
|---|---|
| Location | 75,703 – 75,762 |
| Length | 59 |
| Max. P | 0.997790 |
| Location | 75,703 – 75,762 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Shannon entropy | 0.35801 |
| G+C content | 0.45989 |
| Mean single sequence MFE | -13.00 |
| Consensus MFE | -10.01 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.18 |
| SVM RNA-class probability | 0.997790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 75703 59 - 21146708 UUGUUCCU-UUUCCACCGCUCCUAAAUCGUCACUAGCUCACCGACGCUAGUUUGACGAGC ........-.................(((((((((((........))))))..))))).. ( -13.60, z-score = -2.53, R) >droSim1.chr2h_random 895565 59 - 3178526 AUGUU-CUAUUUCCACCGCUCCCAAAUCGUCACUAGCUUACCGAAGCUAGUUUGACGAAC .....-....................(((((((((((((....))))))))..))))).. ( -15.80, z-score = -4.46, R) >droSec1.super_153 15074 60 - 43206 AUGUUCCUAUUUCCACCGCUCCCAAAUCGUCACUAGCUUACCGAAGCUAGUUUGACGAAC ..........................(((((((((((((....))))))))..))))).. ( -15.80, z-score = -4.68, R) >droYak2.chr2h_random 3346047 59 + 3774259 -UAUUAAUUUCUCCAAUGUUCCUUAAUCGACGCUAACUCACCAACGUUAUGUUGACGCGG -.........................((((((.((((........))))))))))..... ( -6.80, z-score = -0.44, R) >consensus AUGUUCCUAUUUCCACCGCUCCCAAAUCGUCACUAGCUCACCGAAGCUAGUUUGACGAAC ..........................(((((((((((........)))))..)))))).. (-10.01 = -10.20 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:56 2011