| Sequence ID | dm3.chr2R |
|---|---|
| Location | 67,901 – 67,996 |
| Length | 95 |
| Max. P | 0.929364 |
| Location | 67,901 – 67,996 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 65.08 |
| Shannon entropy | 0.47915 |
| G+C content | 0.48050 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -13.35 |
| Energy contribution | -12.70 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 67901 95 + 21146708 UCUUGCA----CUGAGCCAACUGUUCUAGUUCGUUGGCUUGUGUUAACUACUCCCCCUUCAAGAUUACGGCCGUCCUCGGCUG-GUCCUUAUUCGGCGAU ....(((----(.((((((((...........)))))))))))).......((.((....(((....((((((....))))))-...)))....)).)). ( -26.60, z-score = -1.63, R) >dp4.Unknown_group_128 17045 99 - 26480 UCUUGCAGGAAUCCCGCCCAGUUGCCAAUUUGGUUAACAUUUGUUAACUACUCCCUCUUUCAAGACUUGGCCGUCCUCGCUCAAGCCCAUGUUCUUCAG- (((((.((((.....((......)).....((((((((....)))))))).....)))).)))))((((..((....))..))))..............- ( -19.00, z-score = -1.04, R) >droPer1.super_49 550335 93 + 569410 --UUUCA----CUCCGCCCAAUGGCCAAUUUGGUUAACAUUUGUUAACUACUCCCUCCUCCAAGACUUGGCUGUCCUCGGUAGAGCUCAAUUUUUUCAA- --.....----(((..((..((((((((..((((((((....))))))))....((......))..))))))))....))..)))..............- ( -20.70, z-score = -2.27, R) >consensus UCUUGCA____CUCCGCCCAAUGGCCAAUUUGGUUAACAUUUGUUAACUACUCCCUCUUCCAAGACUUGGCCGUCCUCGGUAGAGCCCAUAUUCUUCAA_ ..............................((((((((....))))))))............((.((((((((....))))))))))............. (-13.35 = -12.70 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:55 2011