| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 3,268,311 – 3,268,447 |
| Length | 136 |
| Max. P | 0.890871 |
| Location | 3,268,311 – 3,268,447 |
|---|---|
| Length | 136 |
| Sequences | 3 |
| Columns | 136 |
| Reading direction | reverse |
| Mean pairwise identity | 65.93 |
| Shannon entropy | 0.48116 |
| G+C content | 0.48964 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -23.18 |
| Energy contribution | -23.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 3268311 136 - 3288761 ACACUUGUUUUUUGGACGCUGUCUCGCGCAGUGUUGGCAGUUAGACCACAACAUCAAAAUAUAACUGUAUUGUUAGAUAAGACUGCAUUGCUUGCCCGUUAGGGCAAAGCUUUACCCCUCACUCCGCGCGUAGCCG ......(((.....)))((((.(.((((.((((..(((((((.((........))......((((......)))).....))))))...((((((((....)))).))))......)..)))).)))).))))).. ( -38.40, z-score = -1.17, R) >droYak2.chrU 14080304 129 - 28119190 ACAUUUUCAUUUUG--CGCUGUCUAGCGCAGUGUCGGCAGUUGGACAAUAACAACA--ACAUAAGUGUAGUGC--GAU-AGACUGCAUUUGUGGCCCGUCAGGGCAUCACUGUCCCCCUCACACUGCGAGCAGCUG ..............--.(((((....((((((((.((.....(((((.........--.((((((((((((.(--...-.)))))))))))))((((....)))).....)))))..)).)))))))).))))).. ( -50.30, z-score = -3.42, R) >droAna3.scaffold_13250 2914117 121 + 3535662 ----------UUUGGAUGCUGUCUUGCAGAGUGUCGGCAACUGAAAAAUUACAAAA-CAUCCUACUGCAGUGC--GAAAAAACUGCAUUC-UUGCCCAUU-GGGCAACACAUCACCCCUCAAGUGGUGCGUGGCUG ----------((..(.(((((.(.........).))))).)..))...........-((.((...((((((..--......))))))...-.(((((...-)))))((.((((((.......)))))).)))).)) ( -32.20, z-score = -0.14, R) >consensus ACA_UU___UUUUGGACGCUGUCUAGCGCAGUGUCGGCAGUUGGACAAUAACAACA__AUAUAACUGUAGUGC__GAUAAGACUGCAUUC_UUGCCCGUUAGGGCAACACUUUACCCCUCACACCGCGCGUAGCUG .................((((...(((((.(((..((............................((((((..........))))))......((((....))))..........))..)))...))))))))).. (-23.18 = -23.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:55 2011