| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 3,189,913 – 3,190,007 |
| Length | 94 |
| Max. P | 0.984799 |
| Location | 3,189,913 – 3,190,007 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 54.94 |
| Shannon entropy | 0.75501 |
| G+C content | 0.34903 |
| Mean single sequence MFE | -16.61 |
| Consensus MFE | -8.47 |
| Energy contribution | -7.16 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 3189913 94 - 3288761 AUGGGAAAUUGAACUUUUCUUACGAUAGGGACAUUUCAUCUUUCAAGAUAACUGUUCCUAAUAAGUUAUUUUCUACAAUUUGUUCUGGUAAUAG .((((((((..(((((.((....))((((((((.((.((((....)))))).))))))))..)))))))))))))................... ( -16.50, z-score = -0.80, R) >droAna3.scaffold_13099 2437764 87 + 3324263 UUACAAAAUUUGAAUAUUCAUACACCAGGCACACGUCAACUUUCAAAAUACGUGUGCCCUUGCAGAUGUUCAAGACAAUUUGUUCCG------- ..(((((.((((((((((....((...(((((((((.............)))))))))..))..))))))))))....)))))....------- ( -21.42, z-score = -3.54, R) >droPer1.super_2 7307588 94 + 9036312 UGGAUAAAUUCAACAUCUCUUAUGCCAGGGAGAUUGCUUCCUUUAAAAUAAACUUCUCCCCGACUCAAUAUGUUACCAUUUGCUCUGUCCAGAG ((((((.....................((((((.....................)))))).(((.......)))...........))))))... ( -14.70, z-score = -0.26, R) >droVir3.scaffold_12958 1578056 83 - 3547706 -AGGAGAAUUUGAAGUCUCUUAUUAAAGGGAUAUUGCGUCCUUUAAAAUAAGUGUUCCGCCCGAAAUAUUUACUGAUAUUUGUU---------- -((((((........)))))).((((((((........))))))))..((((((((.(....).))))))))............---------- ( -13.80, z-score = -0.21, R) >consensus UUGGAAAAUUUAAAUUCUCUUACGACAGGGACAUUGCAUCCUUCAAAAUAAGUGUUCCCCCGAAGAUAUUUACUACAAUUUGUUCUG_______ ...........................((((((((...............)))))))).................................... ( -8.47 = -7.16 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:53 2011