| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 3,184,323 – 3,184,444 |
| Length | 121 |
| Max. P | 0.974284 |
| Location | 3,184,323 – 3,184,444 |
|---|---|
| Length | 121 |
| Sequences | 4 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 55.59 |
| Shannon entropy | 0.72624 |
| G+C content | 0.55602 |
| Mean single sequence MFE | -41.17 |
| Consensus MFE | -20.75 |
| Energy contribution | -19.62 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 3184323 121 - 3288761 GGUUGCUACUGCUGGGGGUGCUCCCCCCUGGUGAAGUCAGCGUAGCUGAAGCCAUAACGUGUUUCGUUGUUGAUAGUCACUGUUGAUGUAUGGACGACGUUCGGCGGUGGAGCCAUUGCCU ((((.(((((((((((((....))))).((((....(((((...))))).))))......(...(((((((.(((((((....)))).))).)))))))..)))))))))))))....... ( -48.00, z-score = -2.19, R) >droAna3.scaffold_13230 1285276 110 - 3602488 -------GAUUGCAAGAACAUUUUCUC---UUGGCGCUGCCAUUGCUGGUCGUUGAUCAAUUGCUGUGAGUUGC-GUCGCUGUUGUUGUGGGAGAGUCCUCUGGAGAUCUGACUGUUGCUG -------((((...(((..((((((((---..(((((.(((((.(((((((...)))))...)).))).)).))-)))((.......))))))))))..)))...))))............ ( -28.50, z-score = 0.84, R) >droEre2.scaffold_4855 209204 121 + 242605 GGUUGCUGUUGCUGGGGGUAUCCUCCCCUGGUGACGUCAGCGUAGCUAAAGCCAGAGUAUGUGGCGUUGUUGGUUGUCGCUGGUGGUGUAUGGGCCUCUUUCGGCGGUGGAGUCAUUGCCU ((((...((..(..((((......))))..)..)).(((((((((((((.((((.......))))....))))))).)))))).........))))......(((((((....))))))). ( -50.60, z-score = -2.44, R) >droYak2.chrU 11703848 98 - 28119190 ---------------GGUUGCUGCU-----GUGAUGUCAGCGUAGCUGAAGCCAGAGCGUGUGGCGGUGUUGGUAGUCACUGGUGUUGAAUG---GGCGUUCGGCGGUGGAGCCAUUGCCU ---------------.((..(((((-----.((...(((((...)))))...)).)))).)..))(((..((((..(((((...(((((((.---...)))))))))))).))))..))). ( -37.60, z-score = -1.02, R) >consensus _______G_UGCUGGGGGUACUCCCCC___GUGACGUCAGCGUAGCUGAAGCCAGAGCAUGUGGCGUUGUUGGUAGUCACUGGUGUUGUAUGGGCGUCGUUCGGCGGUGGAGCCAUUGCCU .............(((((....)))))...((((((((((((..((((..((....))...))))..))))))).)))))......................(((((((....))))))). (-20.75 = -19.62 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:52 2011