| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 3,142,473 – 3,142,527 |
| Length | 54 |
| Max. P | 0.994269 |
| Location | 3,142,473 – 3,142,527 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 66.05 |
| Shannon entropy | 0.57126 |
| G+C content | 0.52315 |
| Mean single sequence MFE | -17.85 |
| Consensus MFE | -11.77 |
| Energy contribution | -12.90 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.994269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 3142473 54 - 3288761 UUACGCAGCUCUCCUGCGAUCUGAUUUGUGGGGAGUUUUAAGACUCCUCACGGU ...(((((.....))))).......((((((((((((....)))))))))))). ( -23.10, z-score = -4.13, R) >droSec1.super_64 106588 54 + 179039 CUGAGCCGCUCCCCUGCACACGCAUGUGUGGGGGGUUUUAAGCCUCUUCACAGA ..(((..(((((((..((((....))))..))))......))))))........ ( -18.70, z-score = -0.91, R) >droYak2.chrU 18483342 54 + 28119190 CAAGGCCAAUCUCCGGAACCCGAAUUUGUGGGGAGUUUUAAGACUCCUCACAUC .............(((...)))....(((((((((((....))))))))))).. ( -18.00, z-score = -2.21, R) >droEre2.scaffold_4685 10521 50 + 193804 CUGGGCAGCUCUACUGCACCUCGAUUUGUGGGGAGUUUUGAAACUUCAGU---- ((((((((.....)))).(((((.....)))))............)))).---- ( -11.60, z-score = 0.08, R) >consensus CUAGGCAGCUCUCCUGCACCCGGAUUUGUGGGGAGUUUUAAGACUCCUCACAG_ ....((((.....)))).........(((((((((((....))))))))))).. (-11.77 = -12.90 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:00:50 2011